fgabriel1891 / biodiversityobservationsminer Goto Github PK

Dear Gabriel Muñoz,

I’m trying to locally construct the Biodiversity Observations Miner, but I got the message Warning: Error in hasGroups: object 'path2' not found. In BiodiversityObservationsMiner - master path to run runApp (), I can get the right results in by taxa page, when I want to go to the by keywords further screening data, click on the Use a biodiversity dictionary to filter results (optional) checkbox will error (mentioned above). I see that the dic path is defined in the ui.R script and is a relative path, which should be fine.

Even if Rstudio was restarted, the result was always the same. Could you help me with the use of the locally app?

Your project is very interesting and very promising! Thank you for creating and open-source such a project! If possible, I also look forward to cooperating with you!

Thank you very much.

Best regards,
Bing
[email protected]

runApp()

Listening on http://127.0.0.1:4109
Warning in readLines(con) :
incomplete final line found on 'www/settings.Rmd'
Warning in readLines(con) :
incomplete final line found on 'www/02-About.Rmd'
Warning: Error in sub: input string 1 is invalid UTF-8
[No stack trace available]

sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] shinydashboard_0.7.1 shinythemes_1.1.1 shiny_1.2.0

loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 crayon_1.3.4 packrat_0.5.0 digest_0.6.18 later_0.7.5 mime_0.6 R6_2.3.0
[8] xtable_1.8-3 magrittr_1.5 rstudioapi_0.8 promises_1.0.1 DT_0.5 tools_3.5.1 htmlwidgets_1.3
[15] markdown_0.9 crosstalk_1.0.0 yaml_2.2.0 httpuv_1.4.5 rsconnect_0.8.12 compiler_3.5.1 htmltools_0.3.6

Really neat project and associated paper. On your hosted site, I'm getting this error message in the console ...

[Deprecation] Synchronous XMLHttpRequest on the main thread is deprecated because of its detrimental effects to the end user's experience. For more help, check https://xhr.spec.whatwg.org/. send @ jquery.min.js:4

... along with some notices in the UI after hitting the "Get Taxa" button.

Cheers!

I installed BOM locally on my pc as suggested in the manual and it starts just fine. When i upload files and press the get taxa button i get a message "error: 'names' attribute [2] must be the same length as the vector [1]". I tried changing the file names and even reinstalled the packages but i get the same result. Any suggestion of how can i fix that?

Dear Gabriel Muñoz,

I’m trying to explore the Biodiversity Observations Miner, but when I got the message “Error: An error has occurred. Check your logs or contact the app author for clarification”. I have been tried using chrome and edge and, also tried to find data by taxonomic name and key-words.

The results were always the same. Could you help me with the use of the app?

I’m very interested to use BOM to get plant records from urban areas datasets. Would be possible to use BOM to get this kind of data? If no, do you have any suggestions?

Thank you very much.

Best regards,
Gustavo
[email protected]