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alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

bfabricpy

API and commad line tools for b-fabric

bfabricshiny

Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data

biobeamer

cakeme

fcc

An automated rule-based processing tool for life science data.

iscb2017

This R package contains data and vignette files for a Pigeon Pea (Cajanus cajan) project from a Indo-Swiss Collaboration in Biotechnology (ISCB) training course on proteome informatics given from January 21th to January 25th 2017 at the National Research Centre on Plant Biotechnology (NRCPB) in New Delhi-110012 by JG, WEW, and CP.

msbackendrawfilereader

Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader

msqc1

mirror of bioc msqc1 package

prolfqua

Differential Expression Analysis tool box R lang package for omics data

prolfquabenchmark_forwitold

prolfqua_manuscript_witold

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

pyfgcz

Move and Convert Mass Spectrometry Data using BioBeamer and FCC

rawdiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

rawfilereader

rawrr

Access Orbitrap data in R lang using C# mono assembly - bioconductor package

rprxhupo2021

shinystore

R package that adds HTML5 Local Storage support to Shiny

specl

prepare peptide spectrum matches for use in targeted proteomics using R and Bioconductor

xlinkx