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biobeamer's Issues
getting some warnings here and there
C:\FGCZ\BioBeamer>c:\python\python312\python.exe C:\FGCZ\BioBeamer\biobeamer2.py file:///c:/FGCZ/BioBeamer IWJpbzA3YmVhbWVyIQ==
C:\FGCZ\BioBeamer\mapping_functions.py:11: SyntaxWarning: invalid escape sequence '\S'
pattern_dest = "^\\\\\\\\fgcz-biobeamer.uzh.ch\\\\Data2San\\\\p65\\\\(Proteomics|Metabolomics)\\\\[A-Z]{1,20}_[1-9]{1,1}\\\\[a-z]{1,30}_([0-9]{8,8})\\\\([A-Za-z_]+)_([0-9]{5,5})\S+$"
C:\FGCZ\BioBeamer\mapping_functions.py:37: SyntaxWarning: invalid escape sequence '\S'
pattern_dest = "^\\\\\\\\fgcz-biobeamer.uzh.ch\\\\Data2San\\\\orders\\\\(Proteomics|Metabolomics)\\\\[A-Z]{1,20}_[0-9]{1,2}\\\\(C[0-9]{3,6})_[a-z]{1,30}_[0-9]{8}\S[^%]+$"
C:\FGCZ\BioBeamer\mapping_functions.py:59: SyntaxWarning: invalid escape sequence '\.'
pattern_dest = "^(\\\\\\\\fgcz-biobeamer.uzh.ch\\\\Data2San\\\\p[0-9]{1,4}\\\\[A-Za-z]{1,20}\\\\[A-Z0-9_]+)(\.PRO\\\\Data\\\\)([0-9]{8,8})(.+)$"
C:\FGCZ\BioBeamer\mapping_functions.py:88: SyntaxWarning: invalid escape sequence '\p'
"""
C:\FGCZ\BioBeamer\mapping_functions.py:95: SyntaxWarning: invalid escape sequence '\.'
pattern_dest = "^(\\\\\\\\fgcz-biobeamer.uzh.ch\\\\Data2San\\\\)(p[0-9]{1,4})(\\\\[A-Za-z]{1,20}\\\\[A-Z0-9_]+)(\.PRO\\\\Data\\\\)([0-9]{8,8})_(C[0-9]{2,5})_(.+)$"
C:\FGCZ\BioBeamer\mapping_functions.py:148: SyntaxWarning: invalid escape sequence '\.'
pattern = ".*(p[0-9]+)\\\\Data\\\\([-0-9a-zA-Z_\\\.]+)$"
C:\FGCZ\BioBeamer\mapping_functions.py:165: SyntaxWarning: invalid escape sequence '\.'
pattern = "(.*p[0-9]+)\\\\Data\\\\([-0-9a-zA-Z_\\\.]+)$"
C:\FGCZ\BioBeamer\mapNetworks.py:8: SyntaxWarning: invalid escape sequence '\B'
user="FGCZ-NET\BioBeamer",
\\fgcz-biobeamer.uzh.ch\Data2San\p33354\Proteomics\Analysis\GenericZip\tomasfranziska_20240426\20240425_SpectronautData.zip
check if files are beamed?
fgcz-r-032 is not commited and make biobeamer run
<host name="fgcz-r-032"
instrument="Analysis"
min_size="1024"
min_time_diff="2"
max_time_diff="2419200"
max_time_delete="604800"
simulate_copy='false'
simulate_delete='false'
func_target_mapping=""
robocopy_mov="false"
pattern=".+Analysis\\GenericZip\\[a-zA-Z]{3,100}_[0-9]{8,8}.+[-0-9a-zA-Z_\/\.\\]+\.(zip)$"
source_path="E:/Data2San/"
target_path="\\fgcz-biobeamer.fgcz-net.unizh.ch\\Data2San"
syshandler_adress="fgcz-ms.uzh.ch"
syshandler_port="514"
>
<b-fabric>
<applicationID>185</applicationID>
</b-fabric>
</host>
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