Comments (16)
can you please rerun
rawrr::installRawrrExe()
and send me the output.
rawrr::installRawrrExe()
trying URL 'https://github.com/fgcz/rawrr/releases/download/1.7.10/rawrr.1.7.10.exe'
Content type 'application/octet-stream' length 28672 bytes (28 KB)
downloaded 28 KB
MD5 5c3b6d0135ffe550bc04615cfc77aaba C:\Users\Administrator\AppData\Local/R/cache/R/rawrr/rawrrassembly/rawrr.exe
[1] 0
from rawrr.
so far this looks good. can you please try some other functions?
f <- rawrr::sampleFilePath() rawrr::readFileHeader(f) rawrr::readIndex(f) |> head() rawrr::readSpectrum(f, scan = 1:9)
if it still does not work, I would propose a quick zoom.
C
I ran in both computers, reported the same error, can you help me solve it?
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Hello @xianxiongma maybe you could try to set your region, location and language format to US and the number format to "point" as separator and not "comma".
best regards
jonas
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can you please provide 1. OS 2. rawrr version and 3. the output of sessionInfo()
C
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what is the output of rawrr::sampleFilePath()
?
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what is the output of
rawrr::sampleFilePath()
?
S <- rawrr::sampleFilePath()
S
[1] "D:/ProgramFiles/R/R-4.2.0/library/rawrr/extdata/sample.raw"
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can you please provide 1. OS 2. rawrr version and 3. the output of
sessionInfo()
C
sessionInfo()
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8 LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rawrr_1.8.1
loaded via a namespace (and not attached):
[1] compiler_4.2.0 tools_4.2.0
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can you please rerun rawrr::installRawrrExe()
and send me the output.
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so far this looks good. can you please try some other functions?
f <- rawrr::sampleFilePath()
rawrr::readFileHeader(f)
rawrr::readIndex(f) |> head()
rawrr::readSpectrum(f, scan = 1:9)
if it still does not work, I would propose a quick zoom.
C
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Still reporting the same error, I still can't run the example
rawrr::readFileHeader(f)
Error in if (rvs != "No RAW file specified!") { :
the condition has length > 1
rawrr::readIndex(f) |> head()
Error in if (rvs != "No RAW file specified!") { :
the condition has length > 1
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@xianxiongma quick zoom in 15minutes? 0710 UTC
https://ethz.zoom.us/j/63334146797
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@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797
Quick zoom? I don't understand, what should I do? I can't open the above URL
from rawrr.
@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797
Quick zoom? I don't understand, what should I do? I can't open the above URL
I just want to how to edit obitrap raw file
from rawrr.
@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797
Quick zoom? I don't understand, what should I do? I can't open the above URL
I wonder if we can have a video session (using zoom) to fix the issue. would that work for you?
from rawrr.
@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797
Quick zoom? I don't understand, what should I do? I can't open the above URL
I just want to how to edit obitrap raw file
of note, rawrr can only read Orbitrap data.
from rawrr.
@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797
Quick zoom? I don't understand, what should I do? I can't open the above URL
I wonder if we can have a video session (using zoom) to fix the issue. would that work for you?
No problem!
from rawrr.
Related Issues (20)
- Get information on gradient HOT 1
- Enhancement - Complete readIndex() function HOT 9
- Peak charges for MS1 spectras HOT 4
- Spectrum scan centroid mZ, intensity and noises values do not match HOT 2
- Error in Example: Length of "x" and "y" are not matching HOT 3
- Read noise value for profile mode mass spectra HOT 4
- Read_Spectrum - Sum Spectra
- unit should be minute / auc computation in seconds HOT 24
- validate_rawrrSpectrum 'StartTime' HOT 4
- "Error: line 1 did not have 9 elements" for readIndex() and readChromatogram() + "Error : No scan vector is provided"for readSpectrum HOT 9
- Problem executing readChromatogram inside Singularity container HOT 5
- Add a check if `input` file exists and is not empty
- Switch to RawFileReader 5.0.93 HOT 2
- different total number of Spectra in msconvert, compomics/ThermoRawFileParser and thermofisherlsms/RawFileReader HOT 2
- Request for auc.rawrrChromatogram HOT 3
- profile mode in readSpectrum HOT 11
- speed up readIndex/readSpectrum by base::textConnection HOT 14
- rawrr::buildRawrrExe() fails HOT 6
- auc.rawrrChromatogram question
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