Name: Finlay Maguire
Type: User
Company: Community Health & Epidemiology / Computer Science, Dalhousie University
Bio: Assistant Professor (Computer Science & Epidemiology). Working on infectious disease genomic epidemiology & data-driven solutions to social crises
Location: Halifax, Nova Scotia, Canada
Blog: maguire-lab.github.io
Finlay Maguire's Projects
Northwood Frailty Microbiome Study
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Analysis and plotting code use for an analysis of incontinence in nulliparas using the NHANES database
A biological data mining project as part of a Masters degree at the University of Edinburgh.
Protein Alignment and Detection Interface
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Repository for suggesting new lineages that should be added to the current scheme
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Simple script to install a specific pangolin (and dependencies) versions
Paired Arrangement of Reads via Kmeans On Unlabelled RNA-Seq
UCL PhD thesis in Bioinformatics (supervised by Thomas A. Richards and Max Telford)
A rabbit hole from some questionable verbatim text chunks
Webserver and command line tool for annotating engineered plasmids
The interactive graphing library for Python (includes Plotly Express) :sparkles:
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
Secretome prediction pipeline
Schemes for SarsCoV2 sequencing
PSORTb command-line docker - Dockerfile and "docker run" wrapper
Repository to contain pdf copies of my publications
Exercises from "Test-Driven Development with Python"
Quick dirty way of mapping ResFinder and NCBI AMR databases to CARD's ARO
A collection of random scripts I have made over the years, barely any documentation though. Enjoy, be careful!
Random 10k sampled test data for MEM/Recomb idea
Resistance Gene Identifier (RGI)
Quick dirty analysis of distribution of Rhodes scholarships by constituencies
Repo to contain attempts at learning rust
Code and analyses for ASM msystems paper.