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altanalyze3

altneo-bt

Automated toolkit for prioritizing Neoantigens for humoral immunity (AltNeo-Bcell) and cellular immunity (AltNeo-Tcell) from bulk-RNA seq

bayests

Quantifying Tumor Specificity using Bayesian probabilistic modeling for drug target discovery and prioritization

bmin7099

BMIN7099/CS7099: Introduction to bioinformatics, University of Cincinnati, Spring semester 2022

database_management_system

C Implementation of a simple Database management system (DBMS), including storage manager and buffer manager.

deepimmuno

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

deepimmuno-web

The web tool for the core functionality of DeepImmuno

exercise_codes

programming exercise codes

kidney_project

labprotocols

linux_handbook_bioinformatics

A Linux Shell Handbook for Bioinformatician

meta-analysis-tcga

A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma

neoantigenworkflow

NeoAntigenWorkflow

numbamcl

CUDA-enabled parallel Markov Chain Clustering, implemented in python numba

pandas_by_examples

A compendium of useful, interesting, inspirational usage of pandas functions, each example will be an ipynb file

public_html

Planning to be a repo to expose files to web-accessible folder

python_visualization_tutorial

A comprehensive guide of how to make publication-ready figures in python

scpyt

Scientific Computing in Python, a practical and ultimate tutorials

sctriangulate

scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

secondary_structure_predictor

A KNN model to predict protein secondary structure using its primary sequence

snaf

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

test_git

I want to use this repo to understand some operations of git

ucsc_custom_track_builder

Ease the workload for building UCSC custom track

weblogo_peptide

Peptide weblogo generation using pure Python