The BRAINSTools is a harness to assist in building the many of the BRAINSTools under development.
Developers should run the ./Utilities/SetupForDevelopment.sh script to get started.
If developing on Mac OS X, make sure the xcode command line tools are installed with the command:
xcode-select --install
For more information on the individual BRAINSTools, please see the following link: https://github.com/BRAINSia/BRAINSTools/wiki
Example session for a clean build:
mkdir ~/src/mytester
cd ~/src/mytester
git clone git://github.com/BRAINSia/BRAINSTools.git
cd BRAINSTools/
bash ./Utilities/SetupForDevelopment.sh
mkdir -p ../BRAINSTools-build
cd ../BRAINSTools-build/
CC=/usr/bin/gcc-4.2 CXX=/usr/bin/g++-4.2 ccmake ../BRAINSTools \
-DUSE_BRAINSConstellationDetector:BOOL=ON \
-DUSE_BRAINSABC:BOOL=ON
## NOTE: If you are using a version of Python different from the system default, CMake will ignore your
## environment variables. To ensure CMake points to the right version, you need to set the
## following variables as well:
## -DPYTHON_LIBRARY:PATH=/path/to/python/lib \
## -DPYTHON_INCLUDE_DIR:PATH=/path/to/python/include
make -j${NUMOFTHREADS} -k
## NOTE: The fetching of data still has problems with parallel builds, so we need to restart it at least
# once
makeBuilding BRAINSTools on a fresh Ubuntu install is a trivial task:
- Install the necessary dependencies
sudo apt-get update
sudo apt-get upgrade
sudo apt-get install git cmake cmake-curses-gui python2.7
python2.7-dev g++ freeglut3-dev- Clone the repository and build
git clone https://github.com/BRAINSia/BRAINSTools.git
mkdir build
cd build
CC=/usr/bin/gcc-4.8 \
CXX=/usr/bin/g++-4.8 \
cmake ../BRAINSTools \
-DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 \
-DPYTHON_INCLUDE_DIR2:PATH=/usr/include/x86_64-linux-gnu/python2.7 \
-DPYTHON_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython2.7.so \
-DBUILD_TESTING:BOOL=OFF
make -j${NUMOFTHREADS} -klscpu
BRAINSTools_MAX_TEST_LEVEL adjusts how agressive the test suite is
so that long running tests or incomplete tests can easily be
silenced
1 - Run the absolute minimum very fast tests (These should always pass before any code commit)
3 - Run fast tests on continous builds (These need immediate attention if they begin to fail)
5 - Run moderate nightly tests (These need immediate attention if they begin to fail)
7 - Run long running extensive test that are a burden to normal development (perhaps test 1x per week)
8 - Run tests that fail due to incomplete test building, these are good ideas for test that we don't have time to make robust)
9 - Run silly tests that don't have much untility
set(BRAINSTools_MAX_TEST_LEVEL 3 CACHE STRING "Testing level for managing test burden")
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