Comments (1)
GapCloser need to be in your system PATH. You can add your src to the path
export PATH=$PATH:~/src
You can also add above line to ~/.bashrc, this will load it every time you open new bash terminal window.
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Related Issues (20)
- GFAstats error HOT 3
- Question about scaffolding / gap closing HOT 5
- conda install error HOT 6
- TypeError: reduce() of empty iterable with no initial value HOT 7
- fasta2homozygous.py make my contig file empty HOT 2
- Gap closing error HOT 2
- Conda install issue HOT 1
- Confusing or misleading run text HOT 1
- scaffolding options HOT 1
- RuntimeError: maximum recursion depth exceeded HOT 1
- Problem on performance HOT 1
- Increase the usage of combined assignment operators HOT 1
- [ERROR] Empty FastA file encountered: HOT 2
- Where is the `fasta2diverged.py` script? HOT 1
- How to use redundans in any path
- Gapcloser step no multithread HOT 2
- OSError: [Errno 8] Exec format error HOT 3
- redundant running too long time HOT 3
- SSPACE_Standard_v3.0.pl run failed with Can't open bwa output -- fatal HOT 2
- Docker/singularity container HOT 2
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