new features about redundans HOT 4 CLOSED

automatically estimate read limit setting using homozygous assembly size after reduction
and assuming let's say 50bp reads

from redundans.

• Miss-assembly detection: MisSEQuel
• GMcloser

from redundans.

Is there any plan to fix the excessive gaps when scaffolding pacbio reads? I couldn't get redundans to gap close with the long reads, and ended up running MASURCA's samba close_scaffold_gaps.sh with my long reads in order to get the gaps closed. It took me a while to find the right tool to do this (had problems running other gap filling tools like Gapless, GAPPadder, and MindTheGap, none of which were satisfactory). Putting a note here in case it helps others.

from redundans.

hi, we decided to focus redundans on short-read technologies, so we won't be adding any long-read related features in the future.

from redundans.