Comments (5)
gadenbuie
commented on May 30, 2024
When you say “deleted”, how did you verify that they were removed from your system? Can you show the output from this command? Can you also run devtools::session_info() and paste the output here?
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nicholasviau
commented on May 30, 2024
Whoops, and there's another one:
> devtools::session_info()
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘digest’
Happened on my work computer during the middle of a project with a deadline, so I've just been manually reinstalling packages as errors come along. I'm sorry I don't have a lot of technical documentation at the moment.
I reinstalled digest, so here's the output:
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 3.5.0 (2018-04-23)
os Windows 7 x64 SP 1
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.1252
tz America/New_York
date 2018-10-11
─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date source
assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0)
backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
bindr 0.1.1 2018-03-13 CRAN (R 3.5.0)
bindrcpp * 0.2.2 2018-03-29 CRAN (R 3.5.0)
broom 0.5.0 2018-07-17 CRAN (R 3.5.1)
callr 2.0.4 2018-05-15 CRAN (R 3.5.0)
cellranger 1.1.0 2016-07-27 CRAN (R 3.5.0)
cli 1.0.1 2018-09-25 CRAN (R 3.5.1)
clisymbols 1.2.0 2017-05-21 CRAN (R 3.5.0)
colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0)
crayon 1.3.4 2017-09-16 CRAN (R 3.5.0)
debugme 1.1.0 2017-10-22 CRAN (R 3.5.0)
desc 1.2.0 2018-05-01 CRAN (R 3.5.0)
devtools 1.13.5.9000 2018-06-21 Github (r-lib/devtools@33a9404)
digest 0.6.17 2018-09-12 CRAN (R 3.5.1)
dplyr * 0.7.6 2018-06-29 CRAN (R 3.5.1)
fansi 0.4.0 2018-10-05 CRAN (R 3.5.1)
forcats * 0.3.0 2018-02-19 CRAN (R 3.5.0)
ggplot2 * 3.0.0 2018-07-03 CRAN (R 3.5.1)
glue 1.3.0 2018-07-17 CRAN (R 3.5.1)
gtable 0.2.0 2016-02-26 CRAN (R 3.5.0)
haven 1.1.1 2018-01-18 CRAN (R 3.5.0)
hms 0.4.2 2018-03-10 CRAN (R 3.5.0)
httr 1.3.1 2017-08-20 CRAN (R 3.5.0)
jsonlite 1.5 2017-06-01 CRAN (R 3.5.0)
labeling 0.3 2014-08-23 CRAN (R 3.5.0)
lattice 0.20-35 2017-03-25 CRAN (R 3.5.0)
lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0)
lubridate 1.7.4 2018-04-11 CRAN (R 3.5.0)
magrittr 1.5 2014-11-22 CRAN (R 3.5.0)
memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
modelr 0.1.2 2018-05-11 CRAN (R 3.5.0)
munsell 0.5.0 2018-06-12 CRAN (R 3.5.0)
nlme 3.1-137 2018-04-07 CRAN (R 3.5.0)
pillar 1.3.0 2018-07-14 CRAN (R 3.5.1)
pkgbuild 1.0.0 2018-06-21 Github (r-lib/pkgbuild@0457039)
pkgconfig 2.0.2 2018-08-16 CRAN (R 3.5.1)
pkgload 1.0.0 2018-06-21 Github (r-lib/pkgload@35efedd)
plyr 1.8.4 2016-06-08 CRAN (R 3.5.0)
processx 3.1.0 2018-05-15 CRAN (R 3.5.0)
purrr * 0.2.5 2018-05-29 CRAN (R 3.5.0)
R6 2.3.0 2018-10-04 CRAN (R 3.5.1)
Rcpp 0.12.19 2018-10-01 CRAN (R 3.5.1)
readr * 1.1.1 2017-05-16 CRAN (R 3.5.0)
readxl 1.1.0 2018-04-20 CRAN (R 3.5.0)
rlang 0.2.2 2018-08-16 CRAN (R 3.5.1)
rprojroot 1.3-2 2018-01-03 CRAN (R 3.5.0)
rstudioapi 0.8 2018-10-02 CRAN (R 3.5.1)
rvest 0.3.2 2016-06-17 CRAN (R 3.5.0)
scales 0.5.0 2017-08-24 CRAN (R 3.5.0)
sessioninfo 1.0.0 2017-06-21 CRAN (R 3.5.0)
stringi 1.1.7 2018-03-12 CRAN (R 3.5.0)
stringr * 1.3.1 2018-05-10 CRAN (R 3.5.0)
testthat 2.0.0 2017-12-13 CRAN (R 3.5.0)
tibble * 1.4.2 2018-01-22 CRAN (R 3.5.0)
tidyr * 0.8.1 2018-05-18 CRAN (R 3.5.0)
tidyselect 0.2.5 2018-10-11 CRAN (R 3.5.0)
tidyverse * 1.2.1 2017-11-14 CRAN (R 3.5.1)
usethis 1.3.0 2018-02-24 CRAN (R 3.5.0)
utf8 1.1.4 2018-05-24 CRAN (R 3.5.0)
withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
xml2 1.2.0 2018-01-24 CRAN (R 3.5.0)
yaml 2.2.0 2018-07-25 CRAN (R 3.5.1)
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gadenbuie
commented on May 30, 2024
I'm sorry about the hassle this created!
My guess, from this comment, is that maybe digest was in use during the installation but also was out-of-date on your system so devtools::install_github() updated digest package but later installations failed because digest was needed and the package database was corrupt, resulting in the packages going missing? I'm not really sure because I don't import digest so it would have to be that one of the regexplain dependencies depends on digest and both were out of date.
All of this to say I don't think this is directly an issue within regexplain, but I am going to update the documentation to recommend that it be installed with the upgrade = FALSE flag:
devtools::install_github("gadenbuie/regexplain", upgrade = FALSE)I actually would recommend this in general for installing packages via GitHub. The default behavior for install_github() is to update all out-of-date packages, and for a package like this one where I haven't wasted too much time focused on optimizing for reducing system dependencies this can lead to unexpected things. It's also a good idea to install packages in clean sessions, or to restart your R session before and after installation. This may or may not have helped in this case.
If you happen to have the console output from when you tried to install and can paste it here, that would be super helpful.
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nicholasviau
commented on May 30, 2024
I can go back next week and check the history logs (not in the office until then).
I agree that it was likely a quirk on my end and not an underlying issue with regexplain. I was a bit stressed at the time and just thought "Go to GitHub and document!"
Great RStudio addin, by the way.
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gadenbuie
commented on May 30, 2024
I totally understand and thanks!
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