swagger2BioTools
Tool to convert Swagger configuration files to Bio.Tools input XML.
Steps:
1. Build the project
mvn clean install
2. Run this command to create the ontologies templates
mvn exec:java -Dexec.mainClass="nl.unimaas.bigcat.OntologiesMapTemplateBuilder"
The ontologies files are in resources/ontology.
3. Annotate the terms when it's possible
E.g:
"symbol": "null"
annotated to
"symbol": {
"term": "Gene symbol",
"uri": "http://edamontology.org/data_1026"
}
4.Run this command to convert
mvn exec:java -Dexec.mainClass="nl.unimaas.bigcat.Convert2Biotools"
It will convert all .json files present in resources/input. The output files are in resources/output
The proposal can be found at https://github.com/bio-tools/Studentships/blob/master/openAPI.pdf