Comments (3)
cmungall
commented on September 25, 2024
There is a go-site ticket here: geneontology/go-site#194
The go-site ticket is broader then this one
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vanaukenk
commented on September 25, 2024
@cmungall @kltm
It doesn't look like neo is using the WB gpi file for Noctua annotation entities, i.e. we are trying to annotate a gene for which there is currently no GO annotation and it is not appearing in the autocomplete in either the form or graph editor.
Are there still issues with the WB gpi file that is preventing it from being incorporated into neo?
See: geneontology/go-site#595
Thx.
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cmungall
commented on September 25, 2024
I can try switching back and see if it works, overall we need this better integrated into the pipeline @kltm @dougli1sqrd
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Related Issues (20)
- RNAcentral IDs incorrectly use OBO PURL namespace HOT 5
- Isoform display in label (originally on the visual tool) HOT 4
- Some IDs we expect are not found in Noctua HOT 5
- Transient Xenbase issue dropped GPI file HOT 1
- unresolved IDs HOT 10
- Xenbase identifiers are not correct getting labels (in NEO?) HOT 5
- Some e.coli entries not found HOT 18
- In some cases bad identifiers are getting into the load HOT 5
- Ecoli data is gone from NEO as the upstream source changed HOT 13
- add additional species names to gene labels HOT 6
- Add FB Developmental and Anatomy Ontology HOT 14
- Unknown reduction in entities in NEO build HOT 15
- Add some minimal QC to the NEO pipeline HOT 14
- Some Reactome Identifiers are not resolving HOT 11
- NEO GOlr / Solr load does not use "modern" loader, so does not build all closures for "modern" AmiGO
- Xenbase entities do not seem to propagate to the NEO build from the Xenbase GPI HOT 6
- Would like phage proteins to be available HOT 2
- Request to load more phage proteins HOT 2
- Many ChEBI chemicals not available for metabolic models HOT 17
- Clarify and implement rules on inclusion of RNA gene products / RNA central HOT 4
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