Comments (5)
balhoff
commented on September 25, 2024
Can you paste some specific examples? I looked in NEO and all the PR terms I checked should fall under some CHEBI. Some are under protein while some are under amino acid chain.
from neo.
deustp01
commented on September 25, 2024
some are under amino acid chain.
That looks like wrong chemistry. CHEBI:50047 "a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups" looks like a class of small molecules whose members include, for example, the various amino acid residues found in proteins.
from neo.
vanaukenk
commented on September 25, 2024
@hdrabkin - can you paste the PR ids for the specific examples you showed me? Thanks!
from neo.
hdrabkin
commented on September 25, 2024
The two in question were actually 'new' (they were the ones that were not in neo for several weeks and then the load was fixed:
[Term]
id: PR:000050486
name: alanine--tRNA ligase, cytoplasmic isoform 1 methylated 1 (mouse)
PR:000050487
name: alanine--tRNA ligase, cytoplasmic isoform 1 unmethylated 1 (mouse)
from neo.
balhoff
commented on September 25, 2024
I think @hdrabkin's comment explains things. I'll close, but let me know if this continues to be a problem.
from neo.
Related Issues (20)
- RNAcentral IDs incorrectly use OBO PURL namespace HOT 5
- Isoform display in label (originally on the visual tool) HOT 4
- Some IDs we expect are not found in Noctua HOT 5
- Transient Xenbase issue dropped GPI file HOT 1
- unresolved IDs HOT 10
- Xenbase identifiers are not correct getting labels (in NEO?) HOT 5
- Some e.coli entries not found HOT 18
- In some cases bad identifiers are getting into the load HOT 5
- Ecoli data is gone from NEO as the upstream source changed HOT 13
- add additional species names to gene labels HOT 6
- Add FB Developmental and Anatomy Ontology HOT 14
- Unknown reduction in entities in NEO build HOT 15
- Add some minimal QC to the NEO pipeline HOT 14
- Some Reactome Identifiers are not resolving HOT 11
- NEO GOlr / Solr load does not use "modern" loader, so does not build all closures for "modern" AmiGO
- Xenbase entities do not seem to propagate to the NEO build from the Xenbase GPI HOT 6
- Would like phage proteins to be available HOT 2
- Request to load more phage proteins HOT 2
- Many ChEBI chemicals not available for metabolic models HOT 17
- Clarify and implement rules on inclusion of RNA gene products / RNA central HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from neo.