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scrna_mutations's Introduction

Supplemental data for

Direct detection of expressed mutations in AML cells using single cell RNA-sequencing gives insight into sources of intratumoral expression heterogeneity. (Manuscript in submission)

Software for cell genotyping in scRNA-seq data:

scrna_mutations's People

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pythseq ifiddes-10x-zz sridnona rstatistics lagzxadr yandgong307 flywind2 juzheng87 entcai procha2 mkyriak emilyschwenger dvicencio

scrna_mutations's Issues

Could you help me see why there is such an error in my command

[chengmj2020@b4 mj]$ mrp /pub6/temp/cmj/mj/scrna_mutations-master/gex-depth-position/example.mro runfolder
Martian Runtime - v4.0.2
2020-12-10 09:56:33 [jobmngr] WARNING: configured to use 227GB of local memory, but only 211.1GB is currently available.
2020-12-10 09:56:33 [jobmngr] WARNING: The current process count limit 1024 is low. To increase parallelism, set ulimit -u 2066211.

MRO TypeError: unknown type "csv" for parameter "results"
at /pub6/temp/cmj/mj/scrna_mutations-master/gex-depth-position/mro/split_and_extract.mro:15
included from /pub6/temp/cmj/mj/scrna_mutations-master/gex-depth-position/example.mro:1

2020-12-10 09:56:33 Shutting down.

image

is the last case M1 or M2 aml?

Hi,

In your tsv file with the clinical info it states the final case is M1, but in the case reports it says that case is M2, can you confirm which it is please?

Many thanks,
Jess

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