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scculs's Issues

Fix HFP tie-breaking

Break HFP ties by selecting matching tree in posterior with root height closest to mean root height of posterior (as per Heled and Bouckaert 2013)

Calculate node heights

Add functionality to calculate and add median and mean node heights. Use same methods as Heled & Bouckaert (2013).

Make clade and split hashes full length

Currently clade and split hashes are truncated due to the conversion from C strings (null terminated) to Python strings.

  1. Remove string conversions
  2. Change hash-making functions to return full-length hashes

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