Comments (6)
PedramAsef
commented on July 21, 2024
In both R 4.3.3 and 3.2.2, I could install the package ( GSE5859Subset) and I checked that box in front of it in packages (in Rstudio) .But, when I would call for example tissueGeneExpression, I see the followings (maybe I am doing the procedure not correctly to call data):
library("GSE5859Subset", lib.loc="~/R/win-library/3.2")
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
table(tissue)
Error in table(tissue) : object 'tissue' not found
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found
Please guide me!
Regards
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vjcitn
commented on July 21, 2024
library(BiocInstaller)
biocLite("genomicsclass/tissuesGeneExpression")
library(tissuesGeneExpression)
data(tissuesGeneExpression)
dim(e) # will now work
…On Thu, Feb 1, 2018 at 7:14 PM, DrPedi ***@***.***> wrote:
In both R 4.3.3 and 3.2.2, I could install the package ( GSE5859Subset)
and I checked that box in front of it in packages (in Rstudio) .But, when I
would call for example tissueGeneExpression, I see the followings (maybe I
am doing the procedure not correctly to call data):
library("GSE5859Subset", lib.loc="~/R/win-library/3.2")
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
table(tissue)
Error in table(tissue) : object 'tissue' not found
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found
Please guide me!
Regards
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PedramAsef
commented on July 21, 2024
I appreciate your swift reply!
I have copy/ paste your code in my R console, but still I can see the following errors:
--- Please select a CRAN mirror for use in this session ---
Warning: package ‘devtools’ is in use and will not be installed
library(BiocInstaller)
Error in library(BiocInstaller) :
there is no package called ‘BiocInstaller’
biocLite("genomicsclass/tissuesGeneExpression")
Error in biocLite("genomicsclass/tissuesGeneExpression") :
could not find function "biocLite"
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found
How can I go forward step by step to make sure that I am doing the procedure rightly?
Regards,
from labs.
vjcitn
commented on July 21, 2024
Introductory material of the course discusses how to install R packages.
in this case you can use
source("http://www.bioconductor.org/biocLite.R")
# that will install BiocInstaller
library(BiocInstaller) # will now succeed
…On Thu, Feb 1, 2018 at 11:51 PM, DrPedi ***@***.***> wrote:
I appreciate your swift reply!
I have copy/ paste your code in my R console, but still I can see the
following errors:
--- Please select a CRAN mirror for use in this session ---
Warning: package ‘devtools’ is in use and will not be installed
library(BiocInstaller)
Error in library(BiocInstaller) :
there is no package called ‘BiocInstaller’
biocLite("genomicsclass/tissuesGeneExpression")
Error in biocLite("genomicsclass/tissuesGeneExpression") :
could not find function "biocLite"
library(tissuesGeneExpression)
Error in library(tissuesGeneExpression) :
there is no package called ‘tissuesGeneExpression’
data(tissuesGeneExpression)
Warning message:
In data(tissuesGeneExpression) : data set ‘tissuesGeneExpression’ not found
dim(e)
Error: object 'e' not found
How can I go forward step by step to make sure that I am doing the
procedure rightly?
Regards,
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PedramAsef
commented on July 21, 2024
It works now, my sincere appreciation.
Have a good one,
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Yash507
commented on July 21, 2024
library(devtools) install_github("genomicsclassGSE5859Subset")
library(GSE5859Subset) data(GSE5859Subset)
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