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openplant-incubator's Introduction

OpenPlant Incubator

The code in this repository is open sourced and provides tools to develop a plant incubator with cloud-based monitoring services. At Genspace, we run this code to log regular measurements of plants being grown in our incubator after which information is made available for further analysis via direct query of a Postgres database running on an EC2 server as well as a cache of processed images of our samples that are binned in s3. We hope this repository can be used as a model to inspire similar work among other research teams.

Software Schematic

https://trello.com/b/W0jccEJs/welcome-to-the-project

Please feel free to get in touch with the team.

openplant-incubator's People

Contributors

danwchan avatar eugf avatar gtlangseth avatar hongkong1957 avatar ksandine avatar upomodoro avatar

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openplant-incubator's Issues

BME280???

https://www.adafruit.com/product/2652

Despite the fact that it's 20 dollars for the sensor it might be worth updating the code to use a single bme280 in the center of the incubator box to check the environment - it can also sense barometric pressure if one is interested

I think it's worth the upfront price as only one i2c sensor is needed to monitor the whole incubator environment!

Deploy Processing Pipeline

Implement the pipeline to take images from S3, run them through the pipeline, and store the metrics to a cloud database. The intermediate processed images will also be stored in S3.

Once done the scripts can be put on a server controlled by a chron job.

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