Comments (2)
Hi there,
It can work with paired-end data using a work-around. You can just cat the pair files together:
cat file1_1.fastq.gz file1_2.fastq.gz > file1.fastq.gz
cat file2_1.fastq.gz file2_2.fastq.gz > file2.fastq.gz
cat file3_1.fastq.gz file3_2.fastq.gz > file3.fastq.gz
You can then treat these new files as single-end as use the pipeline as normal.
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Thanks for your solutions, I will try it.
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