gitter-lab / metl-pretrained Goto Github PK
View Code? Open in Web Editor NEWPretrained METL models with minimal dependencies
License: MIT License
Pretrained METL models with minimal dependencies
License: MIT License
The Windows tests are failing after the NumPy 2.0 release
The saved METL models are current in temporary storage on Box. We need to select a permanent repository and move them there. Options include hosting them on Zenodo, using Hugging Face, or something else.
The code example use the model bcEoygY3
. We can replace it with one of the current models YoQkzoLD
or PEkeRuxb
and then uncomment the respective test.
We should consider what error handling is needed. What should happen if an the provided PDB file is inconsistent with the one a METL-Local model was trained on? What should happen if the wild type amino acid in a variant to be scored does not match the actual wild type amino acid at that position?
test3.py
requres 1gfl_cm.pdb
, which is not currently tracked in the repo. After we add it, we can uncomment the respective test.
We would like to publish this package on PyPI so that pretrained models can be loaded without cloning this repo. Before doing that, we need to think through how it interacts with the code in the metl
repository and what the package names should be.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.