Comments (1)
hi @xieyy46 , currently we do not recommend changing the MIN_READS setting since the data is not trained using reads lower than 20. Part of this is because the m6A labels might not be very accurate for site with lowly expressed gene as the chance of those reads containing m6A will be relatively low especially if the m6A stoichiometry is not high to begin with. We'll try to benchmark the performance for the next update using lower number of reads and see if we can do anything about this
from m6anet.
Related Issues (20)
- Identification of m6A with the SG-NEx samples HOT 4
- About the RNA04 dataset to train the model
- Arabidopsis m6anet model for RNA004 HOT 2
- Inference JSONDecoderError HOT 2
- m6Anet inference output missing probability_modified values HOT 8
- Question about the PCA in the paper
- Memory usage exploding HOT 3
- Empty Eventalign.txt for Negative Sense Viral RNA HOT 1
- dataprep and data.log HOT 8
- Questions about the m6A motif HOT 1
- Genome vs transcriptome alignment HOT 4
- m6anet, eventalign, galaxy HOT 3
- error with m6anet dataprep HOT 1
- yet another error with m6anet dataprep HOT 1
- running with test eventalign test file file form github produces another error HOT 8
- installation on linux failed HOT 3
- TypeError: argument should be integer or None, not 'numpy.float64' HOT 2
- Interpreting 'inference' results HOT 1
- m6anet dataprep fails to complete: cannot convert float NaN to integer HOT 3
- Issues with Read Selection HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from m6anet.