gpcrviz / flareplot Goto Github PK
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Home Page: https://gpcrviz.github.io/flareplot/
License: Apache License 2.0
Visualization tool for changing networks
Home Page: https://gpcrviz.github.io/flareplot/
License: Apache License 2.0
Hi,
The current font makes the labels of same size (e.g. 4 letters) appear with varying sizes. Using fixed-width/monospace fonts can fix this problem.
Courier is a pretty standard fixed-width web-font.
Neighbor nodes are highlighted even if edge is faded out.
Also, back button on create page should go to create page
From Mariona:
The keys of resi_to_group and resi_to_name are residue positions at the protein sequence, from residue 1 to the last residue (ex. 390). However, the mdtraj “residue index” gives the residue position at the PDB file, starting by 0. Therefore, if in the PDB the first residue sequence number is the 38, what mdtraj considers as residue index 0 will be residue 38 at resi_to_group and resi_to_name dicts. That's why we obtained shifted numbering: the H bonds were being assigned at residues shifted some positions with respect to the correct ones.
When one uploads a json and visualizes a flareplot (on the flareplot website), it is unclear which pairs of nodes are connected by a given edge. Upon hovering, the edge and the connected node are not being highlighted. They are being highlighted in the example flareplots but not in the uploaded flareplots. It would be great if you could fix this.
Flareplot charting area:
Website:
For manuscript:
Great visualization tool but would like see self to self edges. Great tool, met some of the team at Stanford two months ago.
{
"edges":[
{"name1":"ARG135", "name2":"ASP134", "frames":[0,1,2,3,4,6,7,8,9]},
{"name1":"ASP134", "name2":"TRP161", "frames":[4,5,6,7]},
{"name1":"TYR223", "name2":"ARG135", "frames":[4,5,6,9]},
{"name1":"TYR223", "name2":"TYR306", "frames":[0,1,2,5,6,7,8]},
{"name1":"TYR306", "name2":"VAL54", "frames":[1,4,5,6,7,8]},
{"name1":"TYR306", "name2":"TYR306", "frames":[1,4,5,6,7,8]}
]
}
Just an idea of a nice feature to implement a .svg download of the current view
Hello,
After creating a flareplot, how can I download it for use in a presentation, or download a single image? I see the documentation on embedding it into a webpage, but I don't believe that is what I am looking for.
Best,
Christian
On the input page, links to the python files are broken.
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