grmwld / j.nome.s Goto Github PK

Although loading data and configuring the server can for now be done from the command line, it would be a nice addition to add administration controls via a web interface.

A circular genome should not be represented linearly.

specific UI should be designed to handle these.

http://code.google.com/p/flot/

Or Flotr2: http://www.humblesoftware.com/flotr2/documentation

The ticks of the rulers should indicate whole numbers.

Thus, the space between each tick should be dynamic.

Currently, double clicking on the left edge of the track is quite sloppy.

Need a small button, or a visual cue.

404 and 503 errors are not very reliably handled at the moment.

Waiting for express 3.

Favorite locations / tracks
Colors / theme
...

Feature coordinates are not necessarily known to the user.

In order to avoid him having to check the coordinate on an external web site, there should be a search function.

@param : {String} search_string // takes any string

@do : // Search the currently selected feature tracks
      // for any feature containing a field whose value matches search_string

@returns {Array} // Array of features that match

Currently quite slow.

something of the like should be cool to implement :

layer = 0;
do {
  next = false;
  for (var i = 0, l = self.documents.length-1; i < l; ++i) {
    if (glyph.overlapsWith(self.documents[i])) {
      layer++;
      if (layer > layer_count) {
        self.resize(self.canvas.width, self.canvas.height+40);
        layer_count++;
      }
      glyph.adjustToLayer(layer, function() {
        next = true;
        console.log('glyph : ', glyph.glyph.getBBox().y);
      });
    }
  }
} while (next);

A command line tool to query web pages and render a screenshot would useful for automatizing the process of checking known locations.

Additionally, it could be used to render screenshots from the web interface.

phantomJS seems most appropriate for this task.

Describe

• Launching the application (use forever)
• Supported browsers
• Usage
  • dataset selection
  • track selection
  • navigation