When using our software, we kindly ask you to cite our website url and related publications in all your work (publications, studies, oral presentations,...). In particular, we recommend to cite (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.

• URL: http://www.cytomine.org/
• Logo: Available here
• Scientific paper: Raphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts and Louis Wehenkel. Collaborative analysis of multi-gigapixel imaging data using Cytomine, Bioinformatics, DOI: 10.1093/bioinformatics/btw013, 2016. http://dx.doi.org/10.1093/bioinformatics/btw013

Image Management System (Cytomine-IMS) is a web application for images manipulation. The goal of this server is to carry most of the image operations and to provide a simple REST API with multiple images support. The IMS server provides services to:

• upload an image,
• get image tiles
• get image thumb/preview
• get annotation crop (image roi)
• ...

It uses Grails/Groovy/Java.

It is automatically installed with the Cytomine-bootstrap procedure using Docker.