Comments (1)
SpeedSeq was designed for WGS data, so we've never actually tested it on exome data. However, it ought to scale linearly with the number of reads, so my guess is that it would take less than an hour.
from speedseq.
Related Issues (20)
- compilation of freebayes module fails on Ubuntu 18.04 HOT 2
- Error -running speedseq SV - missing pair end parameters:mean stdev
- Parallel link is dead HOT 1
- problems about vcf files.
- Warning: --split_bam (-S) is deprecated
- speedseq var and sv only on genomic regions
- Read block operation failed with error HOT 1
- is there a container? HOT 2
- Linker error when doing `make cnvnator`
- -M parameter for BWA MEM alignment
- error: static assertion failed: comparison object must be invocable as const
- Bam file not generated using speedseq align
- mismatched line lengths at line 3 within sequence
- Speedseq is runnning infinitely HOT 1
- [Question] Is ARM64 supported ? HOT 1
- configure: error: cannot guess build type; you must specify one
- error: cannot guess build type; you must specify one
- make :can not find -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore
- Are CRAM files supported by SpeedSeq?
- Compile Errors: *** [Makefile:59: cnvnator] Error 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from speedseq.