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ddqc_r's Introduction

ddqcR - An updated fork

Adapted from: https://github.com/ayshwaryas/ddqc

  • Updated ddqc.metrics to:
    • Plot ribo
    • Default do.ribo = TRUE
    • Option to set ribo cutoff filter, percent.ribo.upper.bound = 60
  • Adjusted initialQC to nGenes = 50, mito = 60, ribo = 60

Required R verison >= 4.0.0

Required packages

  • Seurat (>= 4.0.0),
  • ggplot2 (>= 3.3.0)

installation

Use the following command to install the package: devtools::install_github("halterc/ddqc_R")

ddqc_r's People

Contributors

halterc avatar michael-alperovich avatar

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