haobinzhou / get_mr Goto Github PK
View Code? Open in Web Editor NEWA package for running MR In batches and in parallel quickly
License: GNU General Public License v3.0
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lzf4835 ijustwanthaveaname wxw321675 qcchen2049 forget999 zengzeng12 onlysunjun zjrwtxdaydayup jeaffon bigwanglab anyangshenwang jtnedoctor limour-dev easondevin drmewo erlden drhushuiqing supermutou rick-chen-pku zc-1997 ayueme sshuaichai shujuecn tommo-max yeq9527get_mr's Issues
输入数据需要包含哪些特定列？或者说需要列名保证一种统一格式吗？
| 我输入的表格如上，但是运行之后，显示： |
|---|
| ================================================== |
| [1] "一共有0个SNP成功匹配EAF,占比0%" |
| [1] "一共有0个SNP是major allele，EAF被计算为1-MAF,在成功匹配数目中占比NaN%" |
| [1] "一共有604个SNP在1000G中找不到，占比100%" |
| [1] "一共有0个SNP在输入数据与1000G中效应列与参照列，将剔除eaf，占比0%" |
| [1] "输出数据中的type列说明：" |
| [1] "raw：EAF直接等于1000G里的MAF数值，因为效应列是minor allele" |
| [1] "corrected：EAF等于1000G中1-MAF，因为效应列是major allele" |
| [1] "error：输入数据与1000G里面提供的数据完全不一致，比如这个SNP输入的效应列是C，参照列是G，但是1000G提供的是A-T，这种情况下，EAF会被清空（NA），当成匹配失败" |
下载使用
目前是没办法下载代码zip了吗？
Error in cause_getmr
Hi,
Thank you so much for the very nice software. When I run the software using test data, a error showed as follows, Error in sample.int(length(x), size, replace, prob) :
cannot take a sample larger than the population when 'replace = FALSE'
I didn't known what happened and do you know how to deal with them? Thanks a lot.
Lee
mac安装问题
您好，安装您的r包的时候用不了在线安装，本地安装提示没有 (no DESCRIPTION)文件，这种情况怎么处理呀，是因为我用的是macos？ 期待您的回复
devtools::install_local("Get_MR-main.zip")
Error: Failed to install 'Get' from local:
Does not appear to be an R package (no DESCRIPTION)
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