hapifhir / hapi-fhir-android-integration-test Goto Github PK

  IParser parser = FhirContext.forDstu2().newJsonParser();
                parser.setPrettyPrint(true);
                String jsonDump = parser.encodeResourceToString(patient);

This prints proper Patient JSON but while using newXMLParser I am getting this error

detailMessage = "Unable to initialize StAX - XML processing is disabled"
cause = {FactoryConfigurationError@13489} "javax.xml.stream.FactoryConfigurationError: Provider com.bea.xml.stream.XMLOutputFactoryBase not found"

I have added following gradle dependencies :

{
    implementation "javax.xml.stream:stax-api:1.0-2" // for fhir xml parsing
    implementation "ca.uhn.hapi.fhir:hapi-fhir-android:5.1.0"
    implementation "ca.uhn.hapi.fhir:hapi-fhir-structures-dstu2:5.1.0"

}

configurations {
    all*.exclude group: 'org.codehaus.woodstox'
    all*.exclude group: 'org.apache.httpcomponents'
}

Q1: How to resolve this XML parser error ?

Q2: I can convert the Patient data in HL7 Pipes/Segments data in Android ?
In java we can use this link and this as reference. I want to achieve similar behavior in Android without using ADT_A01 object- hapi-base-2.2.jar

using okhttp3 version :

 implementation(platform("com.squareup.okhttp3:okhttp-bom:4.9.1"))
    implementation("com.squareup.okhttp3:okhttp")
    implementation("com.squareup.okhttp3:logging-interceptor")

and fhir version:

  implementation ('ca.uhn.hapi.fhir:hapi-fhir-android:5.4.0')
    implementation "ca.uhn.hapi.fhir:hapi-fhir-structures-r4:5.4.0"

but getting error on:
client!!.search().forResource(Patient::class.java)
.where(ReferenceClientParam("organization").hasId(managingOrgRefId))
.prettyPrint()
.returnBundle(Bundle::class.java)
.execute()

error:
Process: com.ehr.myairmed, PID: 18952 java.lang.NoClassDefFoundError: Failed resolution of: **Lokhttp3/internal/Version;** at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.addUserAgentHeader(OkHttpRestfulClient.java:130) at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.addHeadersToRequest(OkHttpRestfulClient.java:123) at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.initBaseRequest(OkHttpRestfulClient.java:76) at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.createGetRequest(OkHttpRestfulClient.java:112) at ca.uhn.fhir.rest.client.impl.BaseHttpClientInvocation.createHttpRequest(BaseHttpClientInvocation.java:77) at ca.uhn.fhir.rest.client.method.HttpGetClientInvocation.asHttpRequest(HttpGetClientInvocation.java:106) at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:266) at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:540) at ca.uhn.fhir.rest.client.impl.GenericClient$FetchConformanceInternal.execute(GenericClient.java:832) at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBase(RestfulClientFactory.java:300) at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBaseIfConfiguredToDoSo(RestfulClientFactory.java:264) at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:227) at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:540) at ca.uhn.fhir.rest.client.impl.GenericClient$SearchInternal.execute(GenericClient.java:1994) at com.ehr.myairmed.hl7.Hl7FhirHelper$getPatientList$1.invokeSuspend(Hl7FhirHelper.kt:71) at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:33) at kotlinx.coroutines.DispatchedTask.run(DispatchedTask.kt:106) at kotlinx.coroutines.scheduling.CoroutineScheduler.runSafely(CoroutineScheduler.kt:571) at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.executeTask(CoroutineScheduler.kt:750) at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.runWorker(CoroutineScheduler.kt:678) at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.run(CoroutineScheduler.kt:665) Caused by: java.lang.ClassNotFoundException: Didn't find class "okhttp3.internal.Version" on path: DexPathList[[zip file "/data/app/com.ehr.myairmed-PmBruunO0gzf42vs1DzCoA==/base.apk"],nativeLibraryDirectories=[/data/app/com.ehr.myairmed-PmBruunO0gzf42vs1DzCoA==/lib/arm64, /data/app/com.ehr.myairmed-PmBruunO0gzf42vs1DzCoA==/base.apk!/lib/arm64-v8a, /system/lib64, /system/product/lib64]] at dalvik.system.BaseDexClassLoader.findClass(BaseDexClassLoader.java:196) at java.lang.ClassLoader.loadClass(ClassLoader.java:379) at java.lang.ClassLoader.loadClass(ClassLoader.java:312) at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.addUserAgentHeader(OkHttpRestfulClient.java:130)  at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.addHeadersToRequest(OkHttpRestfulClient.java:123)  at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.initBaseRequest(OkHttpRestfulClient.java:76)  at ca.uhn.fhir.okhttp.client.OkHttpRestfulClient.createGetRequest(OkHttpRestfulClient.java:112)  at ca.uhn.fhir.rest.client.impl.BaseHttpClientInvocation.createHttpRequest(BaseHttpClientInvocation.java:77)  at ca.uhn.fhir.rest.client.method.HttpGetClientInvocation.asHttpRequest(HttpGetClientInvocation.java:106)  at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:266)  at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:540)  at ca.uhn.fhir.rest.client.impl.GenericClient$FetchConformanceInternal.execute(GenericClient.java:832)  at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBase(RestfulClientFactory.java:300)  at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBaseIfConfiguredToDoSo(RestfulClientFactory.java:264)  at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:227)  at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:540)  at ca.uhn.fhir.rest.client.impl.GenericClient$SearchInternal.execute(GenericClient.java:1994)  at com.ehr.myairmed.hl7.Hl7FhirHelper$getPatientList$1.invokeSuspend(Hl7FhirHelper.kt:71)  at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:33)  at kotlinx.coroutines.DispatchedTask.run(DispatchedTask.kt:106)  at kotlinx.coroutines.scheduling.CoroutineScheduler.runSafely(CoroutineScheduler.kt:571)  at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.executeTask(CoroutineScheduler.kt:750)  at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.runWorker(CoroutineScheduler.kt:678)  at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.run(CoroutineScheduler.kt:665)  I/Process: Sending signal. PID: 18952 SIG: 9
Ques 1:
How to resolve this ??

Ques 2:
How to parse getPatientsList response using Retrofit.
I am using Call getPatients, I am getting correct response Retrofit isn't mapping the response.

A long time has passed since this project was updated to the latest version of Android.

It would be nice to migrate it to the latest stable version of Android Jetpack.

About

Since 2019, Kotlin is Google preferred language for Android development.

The migrations is quite simple, the only required is the SDK update to its latest version (see issue #3).

Requires

• #4 Update to Android 11 (API 29)