Giter VIP home page Giter VIP logo

cryogan's People

Contributors

harshit-gupta-cor avatar

Stargazers

avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar

Watchers

avatar avatar

Forkers

faisalbi ifsheldon limzh00 shreyakashi

cryogan's Issues

Un resolved references in FunctionsGenerator

Hello,

I was trying to reproduce the results of your wonderful paper. However, there are few functions in the FunctionsGenerator file that don't exist in the project repository. These are _doPlots, CTFGeneratorSpatial, UnSymmetryFunction, Support.SymCreator, and Support.SymUncreator _. Is there any chance that you explain what are these? It seems some part of the project is missing. Thanks a lot. @harshit-gupta-cor

Error in astra package with data shape

I am trying to run CryoGAN to reproduce results published in your paper.

I encountered a problem. We successfully set up the conda environment, but when we try running the code with any of the supplied configuration files, we encounter a problem.

After fixing several misslinked paths I finally managed to get it running but after the training process starts I get the error below. I did set up the environment with the same packages, but also tried other versions of astra toolbox.

By running this command:

python main_Clean.py Configs/train_Betagal.cfg

I get this error:

...
Starting the training process ...
Lr decreases every 1.0 epochs
starting Training
Gaussian Blurring everything with sigma 2.0
Varphigenerator data size 101
Traceback (most recent call last):
  File "main_Clean.py", line 51, in <module>
    pro_gan.train(dataset=dataset, num_workers=1)
  File "/home/bohakc/cryogan/CryoGAN-Feng/CryoGAN_Clean.py", line 119, in train
    dis_lossIter, wass_lossIter, real_samples = self.optimize_discriminator(images)
  File "/home/bohakc/cryogan/CryoGAN-Feng/CryoGAN_Clean.py", line 261, in optimize_discriminator
    fake_samples, _, _, _, _ = self.gen(real_samples, GaussianSigma=self.args.GaussianSigma, ratio=self.ratio)
  File "/home/bohakc/cryogan/cryoem-env/lib/python3.6/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl
    return forward_call(*input, **kwargs)
  File "/home/bohakc/cryogan/CryoGAN-Feng/Networks_Clean.py", line 39, in forward
    ratio=ratio)
  File "/home/bohakc/cryogan/cryoem-env/lib/python3.6/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl
    return forward_call(*input, **kwargs)
  File "/home/bohakc/cryogan/CryoGAN-Feng/Generators_Clean.py", line 46, in forward
    proj, projClean = self.Projection(X, self.CurrentAngles)
  File "/home/bohakc/cryogan/CryoGAN-Feng/Generators_Clean.py", line 82, in Projection
    proj = Projection(X[0], self.args.RawProjectionSize, vectors.cpu())
  File "/home/bohakc/cryogan/CryoGAN-Feng/Functions/FunctionsGenerator.py", line 40, in Projection
    proj = Project.apply(X, RawProjectionSize, vectors)
  File "/home/bohakc/cryogan/CryoGAN-Feng/Functions/FunctionsGenerator.py", line 305, in forward
    vol_id = astra.data3d.link('-vol', vol_geom, vol_link)
  File "/home/bohakc/cryogan/cryoem-env/lib/python3.6/site-packages/astra/data3d.py", line 64, in link
    return d.create(datatype,geometry,data,True)
  File "astra/data3d_c.pyx", line 94, in astra.data3d_c.create
ValueError: The dimensions of the data do not match those specified in the geometry: (2, 384, 192) != (2, 192, 384)

Do you have any idea what to do to fix this?

Usage Guide

Hi,

Can you provide a guide on how to use the tool?

Regards,
Raj

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.