Name: High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute
Type: Organization
Location: Badalona, Barcelona, Catalonia, Spain
Blog: http://www.germanstrias.org/technology-services/genomica-bioinformatica/
High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute's Projects
Bacterial identification pipeline
Conda recipes for the bioconda channel.
Differential expression/methylation analysis for several platform and techniques
useful python functions
Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
IslandPath standalone software
pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which functions are called and how often; there are various tools that will generate a call graph in that way, usually using debugger or profiling trace hooks - for example: https://pycallgraph.readthedocs.org/ This code was originally written by Edmund Horner, and then modified by Juha Jeronen. See README for the original blog posts and links to their repositories.
Computational method for finding spa types.
Small RNAseq pipeline for paired-end reads
R package for descriptive statistics of XICRA output results