This project forked from broadinstitute/cnvsingle
single cell/nuclei allele specific copy number
single cell/nuclei allele specific copy number
Usage:
cnv=CNVsingle("sc.het_pileup.tsv",adata=data) # load per cell allele counts tsv in pileup format
cnv._preprocess_cn_data_cl(normal_clusters_id)
cnv.plot_cn_profile(cnv,cluster=str(cl))
hmm=CNVsingle.run_full_hmm(cnv,str(cl),norm_cl) CNVsingle.plot_hmm_result(cnv, hmm)
CNVsingle.plot_tiny_hmm_result(cnv, hmm, title="Cluster"+str(cl_idx))
#per cell heatmap results res=CNVsingle._per_cell_cn_data(cnv,normal_clusters_id)
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