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sebastianGehrmann avatar sebastianGehrmann commented on May 14, 2024

Hi @dnieuw, I cannot replicate this error and can see module here
Can you try again after cloning the repository from scratch? If it still doesn't work, can you let me know which python version you are on and your installed packages so I can try and replicate the error?

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dnieuw avatar dnieuw commented on May 14, 2024

Hi @sebastianGehrmann,

I have re-cloned the repo and have found the module, however, lstm_server.py does not seem to be able to import it. I am able to import the module myself when running python from the lstmdata folder itself, so that seems fine. I have installed the required packages via Anaconda, see the complete enviroment:

_license 1.1 py36_1
alabaster 0.7.10 py36_0
anaconda 4.4.0 np112py36_0
anaconda-client 1.6.3 py36_0
anaconda-navigator 1.6.2 py36_0
anaconda-project 0.6.0 py36_0
asn1crypto 0.22.0 py36_0
astroid 1.4.9 py36_0
astropy 1.3.2 np112py36_0
babel 2.4.0 py36_0
backports 1.0 py36_0
beautifulsoup4 4.6.0 py36_0
biopython 1.68 np112py36_0
bitarray 0.8.1 py36_0
blaze 0.10.1 py36_0
bleach 1.5.0 py36_0
bokeh 0.12.5 py36_1
boto 2.46.1 py36_0
bottleneck 1.2.1 np112py36_0
cairo 1.14.8 0
cffi 1.10.0 py36_0
chardet 3.0.3 py36_0
click 6.7 py36_0
clickclick 1.2.1 py36_0 conda-forge
cloudpickle 0.2.2 py36_0
clyent 1.2.2 py36_0
colorama 0.3.9 py36_0
colormath 2.1.1 py36_0 conda-forge
conda 4.3.22 py36_0 conda-forge
conda-env 2.6.0 0 conda-forge
connexion 1.1.10 py36_0 conda-forge
contextlib2 0.5.5 py36_0
cryptography 1.8.1 py36_0
cudatoolkit 7.5 0
cudnn 5.1 0
curl 7.52.1 0
cycler 0.10.0 py36_0
cymem 1.31.2 py36_0 conda-forge
cython 0.25.2 py36_0
cytoolz 0.8.2 py36_0
dask 0.14.3 py36_1
datashape 0.5.4 py36_0
dbus 1.10.10 0
decorator 4.0.11 py36_0
dill 0.2.6 py36_0 conda-forge
distributed 1.16.3 py36_0
docutils 0.13.1 py36_0
entrypoints 0.2.2 py36_1
et_xmlfile 1.0.1 py36_0
expat 2.1.0 0
fastcache 1.0.2 py36_1
flask 0.12.2 py36_0
flask-cors 3.0.2 py36_0
fontconfig 2.12.1 3
freetype 2.5.5 2
ftfy 4.4.2 py36_0 conda-forge
future 0.16.0 py36_0 conda-forge
get_terminal_size 1.0.0 py36_0
gevent 1.2.1 py36_0
glib 2.50.2 1
greenlet 0.4.12 py36_0
gst-plugins-base 1.8.0 0
gstreamer 1.8.0 0
h5py 2.7.0 np112py36_0
harfbuzz 0.9.39 2
hdf5 1.8.17 1
heapdict 1.0.0 py36_1
html5lib 0.999 py36_0
icu 54.1 0
idna 2.5 py36_0
imagesize 0.7.1 py36_0
inflection 0.3.1 py36_0
ipykernel 4.6.1 py36_0
ipython 5.3.0 py36_0
ipython_genutils 0.2.0 py36_0
ipywidgets 6.0.0 py36_0
isort 4.2.5 py36_0
itsdangerous 0.24 py36_0
jbig 2.1 0
jdcal 1.3 py36_0
jedi 0.10.2 py36_2
jinja2 2.9.6 py36_0
jpeg 9b 0
jsonschema 2.6.0 py36_0
jupyter 1.0.0 py36_3
jupyter_client 5.0.1 py36_0
jupyter_console 5.1.0 py36_0
jupyter_core 4.3.0 py36_0
keras 2.0.2 py36_0
keras-gpu 2.0.2 py36_0
lazy-object-proxy 1.2.2 py36_0
libffi 3.2.1 1
libgcc 4.8.5 2
libgfortran 3.0.0 1
libgpuarray 0.6.4 0
libiconv 1.14 0
libpng 1.6.27 0
libprotobuf 3.2.0 0
libsodium 1.0.10 0
libtiff 4.0.6 3
libtool 2.4.2 0
libxcb 1.12 1
libxml2 2.9.4 0
libxslt 1.1.29 0
llvmlite 0.18.0 py36_0
locket 0.2.0 py36_1
lxml 3.7.3 py36_0
lzstring 1.0.3 py36_0 conda-forge
mako 1.0.6 py36_0
markupsafe 0.23 py36_2
matplotlib 2.0.2 np112py36_0
mistune 0.7.4 py36_0
mkl 2017.0.1 0
mkl-service 1.1.2 py36_3
mpmath 0.19 py36_1
msgpack-python 0.4.8 py36_0
multipledispatch 0.4.9 py36_0
multiqc 1.0 py36_4 bioconda
murmurhash 0.26.4 py36_0 conda-forge
navigator-updater 0.1.0 py36_0
nbconvert 5.1.1 py36_0
nbformat 4.3.0 py36_0
networkx 1.11 py36_0
nltk 3.2.3 py36_0
nose 1.3.7 py36_1
notebook 5.0.0 py36_0
numba 0.33.0 np112py36_0
numexpr 2.6.2 np112py36_0
numpy 1.12.1 py36_0
numpydoc 0.6.0 py36_0
odo 0.5.0 py36_1
olefile 0.44 py36_0
openpyxl 2.4.7 py36_0
openssl 1.0.2l 0
packaging 16.8 py36_0
pandas 0.20.1 np112py36_0
pandocfilters 1.4.1 py36_0
pango 1.40.3 1
partd 0.3.8 py36_0
path.py 10.3.1 py36_0
pathlib2 2.2.1 py36_0
patsy 0.4.1 py36_0
pcre 8.39 1
pep8 1.7.0 py36_0
pexpect 4.2.1 py36_0
pickleshare 0.7.4 py36_0
pillow 4.1.1 py36_0
pip 9.0.1 py36_1
pixman 0.34.0 0
plac 0.9.6 py36_0
ply 3.10 py36_0
preshed 1.0.0 py36_0 conda-forge
prompt_toolkit 1.0.14 py36_0
protobuf 3.2.0 py36_0
psutil 5.2.2 py36_0
ptyprocess 0.5.1 py36_0
py 1.4.33 py36_0
pycosat 0.6.2 py36_0
pycparser 2.17 py36_0
pycrypto 2.6.1 py36_6
pycurl 7.43.0 py36_2
pyflakes 1.5.0 py36_0
pygments 2.2.0 py36_0
pygpu 0.6.4 py36_1
pylint 1.6.4 py36_1
pyodbc 4.0.16 py36_0
pyopenssl 17.0.0 py36_0
pyparsing 2.1.4 py36_0
pyqt 5.6.0 py36_2
pytables 3.3.0 np112py36_0
pytest 3.0.7 py36_0
python 3.6.1 2
python-dateutil 2.6.0 py36_0
pytz 2017.2 py36_0
pywavelets 0.5.2 np112py36_0
pyyaml 3.12 py36_0
pyzmq 16.0.2 py36_0
qt 5.6.2 4
qtawesome 0.4.4 py36_0
qtconsole 4.3.0 py36_0
qtpy 1.2.1 py36_0
readline 6.2 2
regex 2017.06.23 py36_0 conda-forge
requests 2.14.2 py36_0
rope 0.9.4 py36_1
ruamel_yaml 0.11.14 py36_1
scikit-image 0.13.0 np112py36_0
scikit-learn 0.18.1 np112py36_1
scipy 0.19.0 np112py36_0
seaborn 0.7.1 py36_0
setuptools 27.2.0 py36_0
simplegeneric 0.8.1 py36_1
simplejson 3.8.1 py36_0 bioconda
singledispatch 3.4.0.3 py36_0
sip 4.18 py36_0
six 1.10.0 py36_0
snowballstemmer 1.2.1 py36_0
sortedcollections 0.5.3 py36_0
sortedcontainers 1.5.7 py36_0
spacy 1.9.0 np112py36_0 conda-forge
spectra 0.0.7 py36_0 conda-forge
sphinx 1.5.6 py36_0
spyder 3.1.4 py36_0
sqlalchemy 1.1.9 py36_0
sqlite 3.13.0 0
statsmodels 0.8.0 np112py36_0
swagger-spec-validator 2.1.0 py36_0 conda-forge
sympy 1.0 py36_0
tblib 1.3.2 py36_0
tensorflow 1.1.0 np112py36_0
tensorflow-gpu 1.1.0 np112py36_0
termcolor 1.1.0 py36_1 conda-forge
terminado 0.6 py36_0
testpath 0.3 py36_0
theano 0.9.0 py36_0
thinc 6.5.2 np112py36_0 conda-forge
tk 8.5.18 0
toolz 0.8.2 py36_0
tornado 4.5.1 py36_0
tqdm 4.15.0 py36_0 conda-forge
traitlets 4.3.2 py36_0
typing 3.6.1 py36_0 conda-forge
ujson 1.35 py36_0
unicodecsv 0.14.1 py36_0
unixodbc 2.3.4 0
wcwidth 0.1.7 py36_0
werkzeug 0.12.2 py36_0
wheel 0.29.0 py36_0
whoosh 2.7.4 py36_0 conda-forge
widgetsnbextension 2.0.0 py36_0
wrapt 1.10.10 py36_0
xlrd 1.0.0 py36_0
xlsxwriter 0.9.6 py36_0
xlwt 1.2.0 py36_0
xz 5.2.2 1
yaml 0.1.6 0
zeromq 4.1.5 0
zict 0.1.2 py36_0
zlib 1.2.8 3

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sebastianGehrmann avatar sebastianGehrmann commented on May 14, 2024

Hey, unfortunately LSTMVis operates on python 2.7 and this is the reason for your error. Ensuring python 3 compatibility would unfortunately require a complete rewrite and is not feasible without significant effort.
Can you try running it with python 2.7? It should all work then.

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dnieuw avatar dnieuw commented on May 14, 2024

Thanks, it works using a Python 2.7 environment on anaconda!

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