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Support project for running QMTools from the QMTools Docker container
I tried to run the qmtools with the tutorial (https://bitbucket.org/dpat/neuro4rii/raw/main/cloudshell_lessons/tutorial_qmtools.md) and the qmviolin and qmtraffic complain about path to the tsv files:
dihengzhang@cloudshell:~/qmtest$ ./qmtraffic bold inputs/sample_bold.tsv -r sample_bold_traffic
(qmtraffic): ERROR: A path to a readable, MRIQC group file (.tsv) must be specified. Exiting...
ENV:
Google shell with docker
Thanks to Shashank Yadav for pointing out this issue! You can use qmviolin to get a sense of which measures are normally distributed…but we need a better solution.
Just do it. :)
Also, add that summary and size measures are not included in reports (because they're not quality-comparable).
Port the Makefile to this project.
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