Comments (2)
Is there a workflow that guarantees success of installation and running, for R3.4.3?
I installed (successfully) the developer's version (1.99.4) of scde, and still encountered the same errors in the running:
attached base packages:
[1] stats graphics grDevices utils datasets baseother attached packages:
[1] scde_1.99.4 flexmix_2.3-13 lattice_0.20-35 devtools_1.13.5loaded via a namespace (and not attached):
[1] modeltools_0.2-22 locfit_1.5-9.1
[3] Rook_1.1-1 haven_1.1.2
[5] carData_3.0-2 stats4_3.4.3
[7] mgcv_1.8-24 rlang_0.3.0.1
[9] pillar_1.3.0 foreign_0.8-70
[11] withr_2.1.2 BiocParallel_1.12.0
[13] BiocGenerics_0.24.0 RColorBrewer_1.1-2
[15] readxl_1.1.0 MatrixModels_0.4-1
[17] extRemes_2.0-9 pcaMethods_1.70.0
[19] cellranger_1.1.0 zip_1.0.0
[21] memoise_1.1.0 RcppArmadillo_0.9.100.5.0
[23] Biobase_2.38.0 rio_0.5.10
[25] forcats_0.3.0 SparseM_1.77
[27] Cairo_1.5-9 quantreg_5.36
[29] parallel_3.4.3 curl_3.2
[31] RMTstat_0.3 methods_3.4.3
[33] Rcpp_0.12.19 edgeR_3.20.9
[35] limma_3.34.9 abind_1.4-5
[37] brew_1.0-6 rjson_0.2.20
[39] hms_0.4.2 digest_0.6.15
[41] openxlsx_4.1.0 distillery_1.0-4
[43] grid_3.4.3 Lmoments_1.2-3
[45] tools_3.4.3 magrittr_1.5
[47] tibble_1.4.2 crayon_1.3.4
[49] car_3.0-2 pkgconfig_2.0.2
[51] MASS_7.3-50 Matrix_1.2-14
[53] data.table_1.11.8 nnet_7.3-12
[55] nlme_3.1-137 compiler_3.4.3
adjusting library size based on 2000 entries
cell : calculating cell-cell similarities ... done
fitting cell models:
cell.1 : IS0802-42
Error in new("FLXMRglmCf", FLXMRglmC(..., family = family), mu = mu) :
could not find function "new"
cell.2 : IS0802-43
Error in new("FLXMRglmCf", FLXMRglmC(..., family = family), mu = mu) :
could not find function "new"
cell.3 : IS0802-45
Error in new("FLXMRglmCf", FLXMRglmC(..., family = family), mu = mu) :
could not find function "new"
### Thanks a lot!
from scde.
Hi Tanpuekai,
Did you manage to solve the problem?
I am facing the same problem but so far I could not solve it in R 3.5.1
Looking forward to hearing from you
Best
from scde.
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from scde.