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We report a section-wide pan-NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolutionary genomics and functional analyses discover new late blight-resistant genes, presenting potential for resistance introgression and/or stacking in hybrid potato breeding. These results will accelerate the potato resistance breeding and our methodology also enlightens the construction of pan-NLRome in other crop species.

Shell 39.54% Python 27.33% R 11.17% Perl 13.10% Visual Basic 6.0 8.87%

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potatopannlrome's Issues

2代annotator与一代不同

教授您好,我看到您第一步的annotator注释中写了一个脚本代码。由于现在annotator更新到了2代,这个脚本已经没法正常使用。所以我想知道您第一步脚本中NLR_4k_gff这个文件是不是可以通过先做出nlr.flanking4k文件后用2代的sudo java -Xmx8000M -jar NLR-Annotator-v2.1b.jar -i nlr.flanking4k -x mot.txt -y store.txt -g output.gff -t 20代码做出吗

05_summary.sh代码文件来源不清楚

老师您好,我在看您 05_summary.sh 这部分代码时 看到有两个输入文件${i}_NLR_class_summary_NLRtracker.xls 和 ${i}_NLR_class_summary_whole_genome.xls,在前面的流程中并没关于它的输出,请问这两个文件是什么,是怎么做出来的

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