hossein-fallahi Goto Github PK

diffrepeats

Quantify repeat element enrichment with next-generation sequencing data

diffreps

Differential analysis for ChIP-seq with biological replicates

drug-resistance-of-breast-cancer

drugcombo-sicodea

a simple, fast and complete app for analyzing the effect of individual drugs and their combinations

edge-in-tcga

Source code to reproduce results from "Exploring Drivers of Gene Expression in The Cancer Genome Atlas" by Rau et al. (2017)

epigenomics_2020

Content for Epigenimcs 2020 workshop

fallahi-bioinformatics-lab

Biomed data analysis

fibrodb

Explore RNA-Sequencing results in fibroblast tissues

findingtfbindingseq

flotilla

Reproducible machine learning analysis of gene expression and alternative splicing data

footprints

Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"

galgo

An evolutionary Algorithm for the Identification and Study of Prognostic Gene Expression Signatures in Cancer

gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

gene-attributes

A shiny app that obtains the coordinates and description of an input gene list (Ensembl v90) using biomaRt package.

gene-expression-and-cancer-biostatistics-

gene_expression

Analysis of RNA seq data to explore gene expression in different types of cancer

geneexpimgtl

TL with CNN for cancer survival prediction using gene-expression data

genept

generate-analytics-report

Generating Covid-19 Analytics Report PDFS with Python

gepia2021

hf-my-temp

intelligentsia

investigating-optimal-chemotherapy-options-for-osteosarcoma-patients-through-a-data-driven-mathemati

invivosyn

An R package to calculate synergy for four arm in vivo experiment

lab-website-template

(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more

landscape-dnb-analysis-for-time-series-data-of-lse-model-irradiated-by-uvb

Codes of "Identifying core dynamic network biomarkers to prevent skin damage from UVB repeated exposure"

learning-bioinformatics-at-home

resources for learning bioinformatics

lmsm

LMSM: a modular approach for identifying lncRNA related miRNA sponge modules in breast cancer

logistic_regression_heart-diseases

machine-learning-on-gene-expression-data-for-staging-classification-of-breast-cancer

Use TCGA data to predict early/late pathologic stage of breast cancer with gene expression data using classification machine learning algorithm, train and test with multiple models, screen and evaluate significant genes from the model