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Hy4m avatar Hy4m commented on June 14, 2024 1

I want to use R to calculate the mantel_test test, and there are 20000 rows of data. After importing R language, there were no errors but no graphs were generated, so I want to ask if mantel_test can't calculate so much data?

Firstly, you should comfirm that all variables (OTUs) are on columns. And then, you can set mantel_fun argument to "mantel.randtest", this means using ade4 package to compute mantel test.

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Hy4m avatar Hy4m commented on June 14, 2024

compute correlation using correlate() function?

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jiaxinwang123456 avatar jiaxinwang123456 commented on June 14, 2024

I want to use R to calculate the mantel_test test, and there are 20000 rows of data. After importing R language, there were no errors but no graphs were generated, so I want to ask if mantel_test can't calculate so much data?

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jiaxinwang123456 avatar jiaxinwang123456 commented on June 14, 2024

I got it, thank you!

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