Different pathways mediate amphotericin-lactoferrin drug synergy in Cryptococcus and Saccharomyces

List of selected GO terms: compare_cneo_scer/Data/Selected_GO_Terms/list_of_selected_GO_terms.txt Plotting Script: compare_cneo_scer/Source/Compare_Global_Enrichment/compare_go_terms.Rmd

Plotting Script: compare_cneo_scer/Source/Compare_Orthologs/compare_orthologs.Rmd

Plotting Script: cneo_synergy/Source/Compare_Fold_Change/compare_A_AL_fold_change.Rmd

Analyse specific gene sets: cneo_synergy/Source/Functional_Enrichment/go_enrichment_specific_set.Rmd Plotting Script: cneo_synergy/Source/Compare_Fold_Change/plot_selected_GO_terms.Rmd

Script for generating Self-Organising Maps and Gene Ontology Enrichment Analysis of each cluster: cneo_synergy/Source/Self_Organising_Maps/EdgeR_RUVs_QL_choose_k/soms_analysis_EdgeR_RUVs_QL_choose_k.Rmd

Plotting Script: cneo_synergy/Source/Self_Organising_Maps/EdgeR_RUVs_QL_choose_k/draw_soms_using_ggplot.Rmd

C. neoformans and S. cerevisiae orthologs information are located in this link. Those in reliability class 1 were identified using BlastP reciprocal top-hits and are one-to-one orthologs. Those in reliability class 2 were orthologs from OrthoMCL, these are not necessarily one-to-one orthologs but could be.