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PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing all article data (title, abstract, authors, affiliations, etc)

License: MIT License

Python 100.00%
async scraping pubmed-scraper download-articles asynchronous pubmed-search pubmed article scraper journal

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descartesmbogning malipalema manse404 awicklund solanovisitor indianhedgehog jbarsotti mahdikalani vansnoden liquidinfinity johnaffolter a-klass ilianamav robertmain53

async-pubmed-scraper's Issues

full article

Thanks for providing this awesome tool; I wonder if it is possible to extract full articles or at least for those papers that are not behind the pay-wall.

error when running the command

Hi,
Thank you so much for providing the tool! I ran into the following error messages when running the command the second time. I am wondering if you know how to fix this? Much appreciated!


Traceback (most recent call last):
  File "async_pubmed_scraper.py", line 268, in <module>
    loop.run_until_complete(build_article_urls(search_keywords))
  File "C:\Users\DENGYX3\Anaconda3\lib\asyncio\base_events.py", line 616, in run_until_complete
    return future.result()
  File "async_pubmed_scraper.py", line 215, in build_article_urls
    await asyncio.gather(*tasks)
  File "async_pubmed_scraper.py", line 171, in get_pmids
    pmids = soup.find('meta',{'name':'log_displayeduids'})['content']
TypeError: 'NoneType' object is not subscriptable

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