Comments (1)
--Hi,
same problem, i can't detect SNV with VAF < 3%.
How to adjust that in the .ini config file ?
``
configureStrelkaGermlineWorkflow.py.ini file:
[StrelkaGermline]
maxIndelSize = 49
minMapq = 20
isWriteRealignedBam = 0
extraVariantCallerArguments =
extraStrelkaArguments = -used-allele-count-min-qscore 20 -min-qscore 10 --strelka-snv-min-qss-ref 0
``
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from strelka.