imperial-igem / django-assembly-methods Goto Github PK

Make in the style of DNAbot and DAMP-Lab

SBOL Designer changes sequence constraints from Linker-Cir-Linker to Cir-Linker-Linker.

Workaround to use template where Linker 1 is found at the end of the construct - i.e. Cir - Linker 2 - parts/linkers... - Linker 1.

Change parsing to shift position of linker 1 from end to the start of the construct when making csv due to requirements of DNABot csv template.

Check that the allConstruct variable or any list of sbol2 component definitions have the expected level of nested component definitions, components, and definitions, for example in the ParserSBOL.getListOfParts() function

Hello,

this issue is to finish the unit tests inside repositry

basic_assembly/tests/...

we have unit tests set up to run on every pull request and everytime someone runs the command specified in the read me

python manage.py test

I have poorly written some some unit tests for the tests_urls.py file and a single unit test in tests_views.py file, these files or located within basic_assembly/tests folder

how our programme finds unit tests is it looks for folders called tests which contain a init.py file and within files which start with test_... inside there it finds Class which starts with test and runs all "unit test" which are function inside this class which begin with test

A description on how django finds unit tests
https://stackoverflow.com/questions/36546168/how-to-run-all-tests-with-python-manage-py-test-command-in-django

A great youtube series on adding unittest for django
https://www.youtube.com/watch?v=qwypH3YvMKc&list=PLbpAWbHbi5rMF2j5n6imm0enrSD9eQUaM

Hello,

this issue is to start creating the unit tests inside repositry

moclo_assembly/tests/...

we have unit tests set up to run on every pull request and everytime someone runs the command specified in the read me

python manage.py test

I have poorly written some some unit tests for the tests_urls.py file and a single unit test in tests_views.py file, these files or located within basic_assembly/tests folder

how our programme finds unit tests is it looks for folders called tests which contain a init.py file and within files which start with test_... inside there it finds Class which starts with test and runs all "unit test" which are function inside this class which begin with test

A description on how django finds unit tests
https://stackoverflow.com/questions/36546168/how-to-run-all-tests-with-python-manage-py-test-command-in-django

A great youtube series on adding unittest for django
https://www.youtube.com/watch?v=qwypH3YvMKc&list=PLbpAWbHbi5rMF2j5n6imm0enrSD9eQUaM

After the assembly template file is loaded into SBOL Designer, filled out and expanded upon by the user, checks that the construct fits assembly assumptions need to be done before the construct is submitted for protocol specification

Based on protocol in "DNA Cloning and Assembly Methods" by Svein Valla, Rahmi Lale