sbol_parser_api's People
sbol_parser_api's Issues
Integrate SBOL parser into API to parse received SBOL file
Parse SBOL file with SBOL parser and return CSVs/location of CSVs
Improve filter to take in user-defined constraints
Currently the entire design space is only trimmed by removing designs with duplicated parts. Will it be possible to take in user constraints and improve the filter (hopefully over different iterations) to remove designs based on additional user constraints? Will also be good for DOE as we learn more rules and are able to eliminate more designs - a good way to complete to DBTL loop.
Interact with Django-DNABOT
Interact with Django-DNABOT to get final python scripts that can be returned to frontend
Accept SBOL files as input
Need an endpoint to receive SBOL files from the frontend.
Output correct csv files from generateMoCloCsv
- Remove
createConstructCsvHeader(constructCsv, minNumberOfParts);
(line 1504) - Remove
createPartsLinkersCsvHeader(partsLinkersCsv);
(line 1509) - Remove
insertLinkers(cd, components, doc, linkers);
(line 1539) - Remove
constructCsv.append(WELLS.get(well_index));
(line 1549) - Remove lines 1579-1588 if not sorting alphabetically
- Rewrite lines 1591-1597 to output parts-linkers csv in the correct format for MoClo assembly
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