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sbol_parser_api's Issues

Improve filter to take in user-defined constraints

Currently the entire design space is only trimmed by removing designs with duplicated parts. Will it be possible to take in user constraints and improve the filter (hopefully over different iterations) to remove designs based on additional user constraints? Will also be good for DOE as we learn more rules and are able to eliminate more designs - a good way to complete to DBTL loop.

Output correct csv files from generateMoCloCsv

  • Remove createConstructCsvHeader(constructCsv, minNumberOfParts); (line 1504)
  • Remove createPartsLinkersCsvHeader(partsLinkersCsv); (line 1509)
  • Remove insertLinkers(cd, components, doc, linkers); (line 1539)
  • Remove constructCsv.append(WELLS.get(well_index));(line 1549)
  • Remove lines 1579-1588 if not sorting alphabetically
  • Rewrite lines 1591-1597 to output parts-linkers csv in the correct format for MoClo assembly

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