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This repository is the implementation code of the paper "Hippocampal replay sequence governed by spontaneous brain-wide dynamics". For the analysis, we used neural and behavioral signals recorded from mice by the Visual Coding - Neuropixels project of the Allen Brain Observatory at the Allen Institute.
To successfully run the code and reproduce the results, the following packages are required.
- Python 3
- numpy
- scipy 1.5.0
- allensdk 2
- matplotlib
- seaborn
- Download the neural recording data. Please refer to the instruction and scripts for accessing the data from the Visual Coding project websites.
- Download the mouse connectivity data. Please refer to the instruction and scripts for accessing the data from the Mouse Connectivity websites.
- The code is currently being compiled and will be available shortly.