This repository is the implementation code of the paper "Hippocampal replay sequence governed by spontaneous brain-wide dynamics". For the analysis, we used neural and behavioral signals recorded from mice by the Visual Coding - Neuropixels project of the Allen Brain Observatory at the Allen Institute.

To successfully run the code and reproduce the results, the following packages are required.

• Python 3
• numpy
• scipy 1.5.0
• allensdk 2
• matplotlib
• seaborn

1. Download the neural recording data. Please refer to the instruction and scripts for accessing the data from the Visual Coding project websites.
2. Download the mouse connectivity data. Please refer to the instruction and scripts for accessing the data from the Mouse Connectivity websites.
3. The code is currently being compiled and will be available shortly.