intermine / bluegenes-tissue-expression-visualizer Goto Github PK

It would be great if we could stop the radio buttons from overlapping into their label, and perhaps set a minimum height for the cells in the expression graphs (so the tissue names don't mix into each other).

This section of the README file says that the project can be served at localhost:3456 via the npm run server script, but the script itself is missing from the package.json file.
In keeping with the structure of the other visualization tools, we can remove the instruction from the README altogether and just use npm run dev

I get the following under Ubuntu 20.04.1 LTS using npm 7.0.8 (manually installed). Suggestions?

npm ERR! code FETCH_ERROR
npm ERR! errno FETCH_ERROR
npm ERR! invalid json response body at https://registry.npmjs.org/@babel%2fplugin-transform-modules-commonjs reason: Unexpected end of JSON input

It looks like the plot is only showing when looking at a Gene in FlyMine (e.g. http://bluegenes.apps.intermine.org/#/reportpage/humanmine/Gene/6087400). In other mines (e.g. http://bluegenes.apps.intermine.org/#/reportpage/humanmine/Gene/1018204) the plot keeps loading.

Can we handle that?

No Expression By Stage Data Found!

change to

No Expression By Stage Data Found

I'm having this issues when I run the tests in bluegenes-tissue-expression-visualizer:

FAIL tests/tissueExpression.test.js :
Cannot find module 'es6-promise' from 'promise.js'

However, Jest was able to find:
'./promise.js'

If you would like to pick this issue up, please comment on the issue to let us know you're working on it :)

Task:

Add preview.png to the root of this repository

How to do this

1. Go to the repo README, and follow instructions to clone and install this repository.
2. Run npm run dev and visit http://localhost:3456
3. Capture a screenshot of the application in action! Try to avoid extra/un-needed whitespace, and try to make it square-ish (this doesn't have to be exact).
4. Save it in the root of this repo, commit it, and make a PR 🎉

Context: these previews will be used here: http://bluegenes.apps.intermine.org/default/debug/tool-store - you can look for other repos under intermine to find similar tasks for other bluegenes-* repositories as several tools are missing previews.

What to do if you need help

Mention @yochannah, tweet @yoyehudi, pop by to say hi on chat or if needed email [email protected] <3

Currently, the react components are not usable if we install the npm package for the tool. This is because JSX is compiled (only under src) using webpack during the build process which is fine so we need to export the "built" react component from our package.

It probably requires to re-configure some webpack configuration. This might be a useful link.