```sh
shell()$ cd neuroh5/
shell()$ cmake .
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found HDF5: /opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64/lib/libhdf5.so;/opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64/lib/libsz.so;/usr/lib64/libz.so;/opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64/lib/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.4")
found HDF5 version 1.10.4
-- Found MPI_C: /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib/release/libmpi.so (found version "3.1")
CMake Warning (dev) at /opt/apps/cmake/3.24.2/share/cmake-3.24/Modules/FindMPI.cmake:1475 (option):
Policy CMP0077 is not set: option() honors normal variables. Run "cmake
--help-policy CMP0077" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
For compatibility with older versions of CMake, option is clearing the
normal variable 'MPI_CXX_SKIP_MPICXX'.
Call Stack (most recent call first):
CMakeLists.txt:66 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found MPI_CXX: /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib/libmpicxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
found MPI version: 3.1
MPI libraries: /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib/release/libmpi.so;/usr/lib64/librt.so;/usr/lib64/libpthread.so;/usr/lib64/libdl.so
-- Found Python: /opt/apps/intel19/python3/3.9.2/bin/python3.9 (found suitable version "3.9.2", minimum required is "3") found components: Interpreter Development Development.Module Development.Embed
-- Python_EXECUTABLE="/opt/apps/intel19/python3/3.9.2/bin/python3.9"
found NumPy include dir /home1/08818/fg14/.local/lib/python3.9/site-packages/numpy/core/include
found mpi4py include dir /opt/apps/intel19/impi19_0/python3/3.9.2/lib/python3.9/site-packages/mpi4py/include
-- Could NOT find JeMalloc (missing: JEMALLOC_LIBRARIES JEMALLOC_INCLUDE_DIR)
-- ParMETIS library: PARMETIS_LIBRARY-NOTFOUND
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY)
CMake Warning at CMakeLists.txt:153 (message):
gtest library not found, tests will not be run
-- Install prefix: /usr/local
-- Build type: RelWithDebInfo
-- Building tests: ON
-- Building documentation:
-- Building python bindings: ON
-- Configuring done
-- Generating done
-- Build files have been written to: /path/to/neuroh5
shell(1019)$ make
[ 1%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/append_tree.cc.o
/path/to/neuroh5/src/cell/append_tree.cc: In function ‘int neuroh5::cell::append_trees(MPI_Comm, MPI_Comm, hid_t, const string&, const CELL_IDX_T&, std::forward_list<std::tuple<unsigned int, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<signed char, std::allocator<signed char> >, std::deque<int, std::allocator<int> >, std::deque<signed char, std::allocator<signed char> > > >&, const std::set<long unsigned int>&, neuroh5::CellPtr, size_t, size_t)’:
/path/to/neuroh5/src/cell/append_tree.cc:416:13: warning: unused variable ‘file’ [-Wunused-variable]
hid_t file;
^
In file included from /path/to/neuroh5/include/cell/cell_attributes.hh:15:0,
from /path/to/neuroh5/include/cell/append_tree.hh:10,
from /path/to/neuroh5/src/cell/append_tree.cc:19:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/cell/append_tree.cc:356:9: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 2%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/cell_attributes.cc.o
/path/to/neuroh5/src/cell/cell_attributes.cc: In function ‘void neuroh5::cell::scatter_read_cell_attribute_selection(MPI_Comm, const string&, int, const string&, const std::set<std::basic_string<char> >&, const string&, const CELL_IDX_T&, const std::vector<unsigned int>&, neuroh5::data::NamedAttrMap&)’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1593:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (size_t p=0; p<size; p++)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1608:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (rank_t p=0; p<size; p++)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1610:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (size_t i = displs[p]; i<displs[p+1]; i++)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1633:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (io_data_size > size)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1707:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (io_root_data_rank == rank)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1714:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (io_root_data_rank != rank)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1720:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if ((rank != io_root_data_rank) && (attr_names_sendbuf.size() > 0))
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1766:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (rank_t p = 1; p < size; ++p)
^
/path/to/neuroh5/src/cell/cell_attributes.cc:1567:14: warning: unused variable ‘status’ [-Wunused-variable]
herr_t status;
^
In file included from /path/to/neuroh5/include/cell/cell_attributes.hh:15:0,
from /path/to/neuroh5/src/cell/cell_attributes.cc:15:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1083:7: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
In file included from /path/to/neuroh5/include/cell/cell_attributes.hh:19:0,
from /path/to/neuroh5/src/cell/cell_attributes.cc:15:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = unsigned int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1459:84: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
hsize_t value_start=range.first;
^
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = short unsigned int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1467:84: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = unsigned char; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1475:83: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1491:83: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = short int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1499:83: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = signed char; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1507:82: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = float; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1521:79: required from here
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:233:13: warning: unused variable ‘value_start’ [-Wunused-variable]
In file included from /path/to/neuroh5/src/cell/cell_attributes.cc:15:0:
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = float; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1877:91: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
const CELL_IDX_T gid = element.first;
^
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = unsigned int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1885:94: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = short unsigned int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1893:94: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = unsigned char; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1901:93: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1909:95: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = short int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1917:95: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
/path/to/neuroh5/include/cell/cell_attributes.hh: In instantiation of ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = signed char; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’:
/path/to/neuroh5/src/cell/cell_attributes.cc:1925:94: required from here
/path/to/neuroh5/include/cell/cell_attributes.hh:520:30: warning: unused variable ‘gid’ [-Wunused-variable]
In file included from /path/to/neuroh5/src/cell/cell_attributes.cc:12:0:
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = unsigned int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = unsigned int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1459:84: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
hsize_t start = range.first;
^
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = short unsigned int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = short unsigned int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1467:84: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = unsigned char; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = unsigned char; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1475:83: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1491:83: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = short int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = short int; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1499:83: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = signed char; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = signed char; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1507:82: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = float; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/include/hdf5/hdf5_cell_attributes.hh:259:83: required from ‘herr_t neuroh5::hdf5::read_cell_attribute_selection(MPI_Comm, const hid_t&, const string&, neuroh5::CELL_IDX_T, const std::vector<unsigned int>&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<_RealType>&) [with T = float; herr_t = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1521:79: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
In file included from /path/to/neuroh5/include/cell/cell_attributes.hh:15:0,
from /path/to/neuroh5/src/cell/cell_attributes.cc:15:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = unsigned int; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:472:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = float; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1877:91: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = long unsigned int; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:484:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = float; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1877:91: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = float; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = float; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1877:91: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = short unsigned int; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = short unsigned int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1893:94: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = unsigned char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = unsigned char; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1901:93: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = int; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1909:95: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = short int; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = short int; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1917:95: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = signed char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/include/cell/cell_attributes.hh:531:9: required from ‘void neuroh5::cell::append_cell_attribute_map(MPI_Comm, const hid_t&, const string&, const string&, const CELL_IDX_T&, const string&, const std::map<unsigned int, std::deque<_Tp> >&, neuroh5::data::optional_hid, const std::set<long unsigned int>&, neuroh5::CellIndex, neuroh5::CellPtr, size_t, size_t, size_t) [with T = signed char; MPI_Comm = int; hid_t = long int; std::string = std::basic_string<char>; neuroh5::CELL_IDX_T = unsigned int; neuroh5::data::optional_hid = compact_optional_ns::compact_optional<neuroh5::data::hid_empty_value>; size_t = long unsigned int]’
/path/to/neuroh5/src/cell/cell_attributes.cc:1925:94: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
[ 3%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/cell_index.cc.o
/path/to/neuroh5/src/cell/cell_index.cc: In function ‘herr_t neuroh5::cell::create_cell_index(MPI_Comm, const string&, const string&, const string&, size_t)’:
/path/to/neuroh5/src/cell/cell_index.cc:46:38: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc: In function ‘herr_t neuroh5::cell::create_cell_index(MPI_Comm, hid_t, const string&, const string&, size_t)’:
/path/to/neuroh5/src/cell/cell_index.cc:128:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc:128:38: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc: In function ‘herr_t neuroh5::cell::append_cell_index(MPI_Comm, const string&, const string&, const CELL_IDX_T&, const string&, const std::vector<unsigned int>&)’:
/path/to/neuroh5/src/cell/cell_index.cc:265:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc:265:38: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc: In function ‘herr_t neuroh5::cell::link_cell_index(MPI_Comm, const string&, const string&, const string&, const string&)’:
/path/to/neuroh5/src/cell/cell_index.cc:376:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
/path/to/neuroh5/src/cell/cell_index.cc:376:38: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 4%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/cell_populations.cc.o
[ 5%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/contract_tree.cc.o
[ 6%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/insert_tree_points.cc.o
[ 7%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/read_tree.cc.o
[ 8%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/scatter_read_tree.cc.o
/path/to/neuroh5/src/cell/scatter_read_tree.cc: In function ‘int neuroh5::cell::scatter_read_trees(MPI_Comm, const string&, int, const std::vector<std::basic_string<char> >&, const node_rank_map_t&, const string&, neuroh5::CELL_IDX_T, std::map<unsigned int, std::tuple<unsigned int, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<signed char, std::allocator<signed char> >, std::deque<int, std::allocator<int> >, std::deque<signed char, std::allocator<signed char> > > >&, std::map<std::basic_string<char>, neuroh5::data::NamedAttrMap>&, size_t, size_t)’:
/path/to/neuroh5/src/cell/scatter_read_tree.cc:75:48: warning: variable ‘io_rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank=0, size=0, io_rank;
^
In file included from /path/to/neuroh5/include/cell/cell_attributes.hh:15:0,
from /path/to/neuroh5/src/cell/scatter_read_tree.cc:19:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/cell/scatter_read_tree.cc:137:9: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 10%] Building CXX object CMakeFiles/neuroh5.cell.dir/src/cell/validate_tree.cc.o
[ 10%] Built target neuroh5.cell
[ 11%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_edge_map.cc.o
[ 12%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_edge_map_selection.cc.o
[ 13%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_rank_attr_map.cc.o
[ 14%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_rank_edge_map.cc.o
[ 15%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_rank_edge_map_selection.cc.o
[ 16%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_rank_tree_map.cc.o
[ 17%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/append_tree_map.cc.o
[ 19%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/attr_map.cc.o
[ 20%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/attr_val.cc.o
[ 21%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/range_sample.cc.o
/path/to/neuroh5/src/data/range_sample.cc: In function ‘void neuroh5::data::range_sample(size_t, size_t, std::set<long unsigned int>&)’:
/path/to/neuroh5/src/data/range_sample.cc:28:14: warning: unused variable ‘val’ [-Wunused-variable]
size_t val;
^
[ 22%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/serialize_cell_attributes.cc.o
/path/to/neuroh5/src/data/serialize_cell_attributes.cc: In function ‘void neuroh5::data::serialize_rank_attr_map(size_t, size_t, const std::map<unsigned int, neuroh5::data::AttrMap>&, std::vector<int>&, std::vector<char>&, std::vector<int>&)’:
/path/to/neuroh5/src/data/serialize_cell_attributes.cc:55:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int key_rank = start_rank; key_rank < end_rank; key_rank++)
^
[ 23%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/serialize_edge.cc.o
/path/to/neuroh5/src/data/serialize_edge.cc: In function ‘void neuroh5::data::serialize_rank_edge_map(size_t, size_t, const rank_edge_map_t&, size_t&, std::vector<int>&, std::vector<char>&, std::vector<int>&)’:
/path/to/neuroh5/src/data/serialize_edge.cc:56:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int key_rank = start_rank; key_rank < end_rank; key_rank++)
^
[ 24%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/serialize_tree.cc.o
In file included from /path/to/neuroh5/include/data/attr_val.hh:16:0,
from /path/to/neuroh5/include/neuroh5_types.hh:34,
from /path/to/neuroh5/include/data/serialize_tree.hh:20,
from /path/to/neuroh5/src/data/serialize_tree.cc:12:
/path/to/neuroh5/src/data/serialize_tree.cc: In function ‘void neuroh5::data::serialize_rank_tree_map(size_t, size_t, const std::map<unsigned int, std::map<unsigned int, std::tuple<unsigned int, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<short unsigned int, std::allocator<short unsigned int> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<float, std::allocator<float> >, std::deque<signed char, std::allocator<signed char> >, std::deque<int, std::allocator<int> >, std::deque<signed char, std::allocator<signed char> > > > >&, std::vector<int>&, std::vector<char>&, std::vector<int>&)’:
/path/to/neuroh5/src/data/serialize_tree.cc:52:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
throw_assert(start_rank < end_rank, "serialize_rank_tree_map: invalid start rank");
^
/path/to/neuroh5/include/throw_assert.hh:145:48: note: in definition of macro ‘throw_assert’
#define throw_assert(EXPRESSION, MESSAGE) if(!(EXPRESSION)) { throw AssertionFailureException(#EXPRESSION, __FILE__, __LINE__, (AssertionFailureException::StreamFormatter() << MESSAGE)); }
^
[ 25%] Building CXX object CMakeFiles/neuroh5.data.dir/src/data/tokenize.cc.o
[ 25%] Built target neuroh5.data
[ 26%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/append_graph.cc.o
/path/to/neuroh5/src/graph/append_graph.cc: In function ‘int neuroh5::graph::append_graph(MPI_Comm, int, const string&, const string&, const string&, const std::map<std::basic_string<char>, std::pair<long unsigned int, neuroh5::data::AttrIndex> >&, const edge_map_t&, hsize_t)’:
/path/to/neuroh5/src/graph/append_graph.cc:282:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int p = 1; p < size; p++)
^
/path/to/neuroh5/src/graph/append_graph.cc:104:41: warning: ‘dst_pop_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dst_start = pop_ranges[dst_pop_idx].start;
^
/path/to/neuroh5/src/graph/append_graph.cc:106:41: warning: ‘src_pop_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
src_start = pop_ranges[src_pop_idx].start;
^
[ 28%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/append_projection.cc.o
[ 29%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/balance_graph_indegree.cc.o
[ 30%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/bcast_graph.cc.o
[ 31%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/compute_vertex_metrics.cc.o
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc: In function ‘void neuroh5::graph::append_vertex_degree_map(MPI_Comm, const node_rank_map_t&, const std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >&, size_t, const std::vector<std::map<unsigned int, long unsigned int> >&, const string&, const string&, const string&)’:
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc:70:20: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
size_t rank, size;
^
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc: In function ‘int neuroh5::graph::compute_vertex_indegree(MPI_Comm, const string&, std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >, size_t)’:
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc:144:14: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
size_t rank, size;
^
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc: In function ‘int neuroh5::graph::compute_vertex_outdegree(MPI_Comm, const string&, std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >, size_t)’:
/path/to/neuroh5/src/graph/compute_vertex_metrics.cc:213:14: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
size_t rank, size;
^
[ 32%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/edge_attributes.cc.o
/path/to/neuroh5/src/graph/edge_attributes.cc: In function ‘herr_t neuroh5::graph::read_edge_attribute_selection(MPI_Comm, const string&, const string&, const string&, const string&, const string&, const DST_PTR_T&, const DST_PTR_T&, const std::vector<unsigned int>&, const std::vector<long unsigned int>&, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, neuroh5::AttrKind, neuroh5::data::NamedAttrVal&, bool)’:
/path/to/neuroh5/src/graph/edge_attributes.cc:592:19: warning: unused variable ‘start’ [-Wunused-variable]
hsize_t start = range.first;
^
/path/to/neuroh5/src/graph/edge_attributes.cc:593:19: warning: unused variable ‘count’ [-Wunused-variable]
hsize_t count = range.second;
^
/path/to/neuroh5/src/graph/edge_attributes.cc:571:15: warning: unused variable ‘block’ [-Wunused-variable]
hsize_t block = 0;
^
In file included from /path/to/neuroh5/include/hdf5/hdf5_edge_attributes.hh:13:0,
from /path/to/neuroh5/include/graph/edge_attributes.hh:8,
from /path/to/neuroh5/src/graph/edge_attributes.cc:12:
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = unsigned int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:611:81: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
hsize_t start = range.first;
^
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = short unsigned int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:618:81: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = unsigned char; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:625:79: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:638:79: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = short int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:645:79: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = signed char; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:652:77: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<T>&, hid_t) [with T = float; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/graph/edge_attributes.cc:664:75: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
[ 33%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/merge_edge_map.cc.o
[ 34%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/node_attributes.cc.o
In file included from /path/to/neuroh5/src/graph/node_attributes.cc:21:0:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/graph/node_attributes.cc:582:7: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 35%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/projection_names.cc.o
[ 37%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_graph.cc.o
[ 38%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_graph_info.cc.o
/path/to/neuroh5/src/graph/read_graph_info.cc: In function ‘int neuroh5::graph::read_graph_info(MPI_Comm, const string&, const std::vector<std::basic_string<char> >&, bool, std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >&, std::vector<std::map<std::basic_string<char>, std::vector<std::vector<std::basic_string<char> > > > >&, std::vector<std::vector<unsigned int> >&)’:
/path/to/neuroh5/src/graph/read_graph_info.cc:56:18: warning: unused variable ‘local_prj_num_nodes’ [-Wunused-variable]
size_t local_prj_num_nodes;
^
/path/to/neuroh5/src/graph/read_graph_info.cc:38:11: warning: unused variable ‘status’ [-Wunused-variable]
int status = 0;
^
[ 39%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_graph_selection.cc.o
[ 40%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_projection.cc.o
[ 41%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_projection_info.cc.o
/path/to/neuroh5/src/graph/read_projection_info.cc: In function ‘herr_t neuroh5::graph::read_projection_info(MPI_Comm, const string&, const std::vector<std::basic_string<char> >&, bool, const pop_range_map_t&, const std::set<std::pair<short unsigned int, short unsigned int> >&, const string&, const string&, neuroh5::NODE_IDX_T, neuroh5::NODE_IDX_T, std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >&, std::vector<std::map<std::basic_string<char>, std::vector<std::vector<std::basic_string<char> > > > >&, std::vector<std::vector<unsigned int> >&)’:
/path/to/neuroh5/src/graph/read_projection_info.cc:204:14: warning: unused variable ‘local_prj_num_edges’ [-Wunused-variable]
size_t local_prj_num_edges=0;
^
[ 42%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/read_projection_selection.cc.o
[ 43%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/scatter_read_graph.cc.o
[ 44%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/scatter_read_graph_selection.cc.o
/path/to/neuroh5/src/graph/scatter_read_graph_selection.cc: In function ‘int neuroh5::graph::scatter_read_graph_selection(MPI_Comm, const string&, int, const std::vector<std::basic_string<char> >&, const std::vector<std::pair<std::basic_string<char>, std::basic_string<char> > >&, const std::vector<unsigned int>&, std::vector<std::map<unsigned int, std::tuple<std::vector<unsigned int, std::allocator<unsigned int> >, std::vector<neuroh5::data::AttrVal, std::allocator<neuroh5::data::AttrVal> > > > >&, std::vector<std::map<std::basic_string<char>, std::vector<std::vector<std::basic_string<char> > > > >&, size_t&, size_t&, size_t&)’:
/path/to/neuroh5/src/graph/scatter_read_graph_selection.cc:85:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (size_t p=0; p<data_size; p++)
^
/path/to/neuroh5/src/graph/scatter_read_graph_selection.cc:100:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (rank_t p=0; p<data_size; p++)
^
/path/to/neuroh5/src/graph/scatter_read_graph_selection.cc:102:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (size_t i = displs[p]; i<displs[p+1]; i++)
^
[ 46%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/scatter_read_projection.cc.o
In file included from /path/to/neuroh5/src/graph/scatter_read_projection.cc:19:0:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/graph/scatter_read_projection.cc:181:11: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 47%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/scatter_read_projection_selection.cc.o
/path/to/neuroh5/src/graph/scatter_read_projection_selection.cc: In function ‘herr_t neuroh5::graph::scatter_read_projection_selection(MPI_Comm, int, const string&, const pop_search_range_map_t&, const std::set<std::pair<short unsigned int, short unsigned int> >&, const string&, const string&, const NODE_IDX_T&, const NODE_IDX_T&, const std::vector<std::basic_string<char> >&, const std::vector<unsigned int>&, const node_rank_map_t&, std::vector<std::map<unsigned int, std::tuple<std::vector<unsigned int, std::allocator<unsigned int> >, std::vector<neuroh5::data::AttrVal, std::allocator<neuroh5::data::AttrVal> > > > >&, std::vector<std::map<std::basic_string<char>, std::vector<std::vector<std::basic_string<char> > > > >&, size_t&, size_t&, size_t&, bool)’:
/path/to/neuroh5/src/graph/scatter_read_projection_selection.cc:111:23: warning: unused variable ‘local_read_blocks’ [-Wunused-variable]
hsize_t local_read_blocks;
^
In file included from /path/to/neuroh5/src/graph/scatter_read_projection_selection.cc:20:0:
/path/to/neuroh5/include/mpi/alltoallv_template.hh: In instantiation of ‘int neuroh5::mpi::alltoallv_vector(MPI_Comm, MPI_Datatype, const std::vector<int>&, const std::vector<int>&, const std::vector<_RealType>&, std::vector<int>&, std::vector<int>&, std::vector<_RealType>&) [with T = char; MPI_Comm = int; MPI_Datatype = int]’:
/path/to/neuroh5/src/graph/scatter_read_projection_selection.cc:200:11: required from here
/path/to/neuroh5/include/mpi/alltoallv_template.hh:42:32: warning: variable ‘rank’ set but not used [-Wunused-but-set-variable]
int srank, ssize; size_t rank, size;
^
[ 48%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/validate_edge_list.cc.o
[ 49%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/validate_selection_edge_list.cc.o
[ 50%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/vertex_degree.cc.o
[ 51%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/write_graph.cc.o
/path/to/neuroh5/src/graph/write_graph.cc: In function ‘int neuroh5::graph::write_graph(MPI_Comm, int, const string&, const string&, const string&, const std::map<std::basic_string<char>, std::pair<long unsigned int, neuroh5::data::AttrIndex> >&, const edge_map_t&, hsize_t)’:
/path/to/neuroh5/src/graph/write_graph.cc:105:41: warning: ‘dst_pop_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dst_start = pop_ranges[dst_pop_idx].start;
^
/path/to/neuroh5/src/graph/write_graph.cc:107:41: warning: ‘src_pop_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
src_start = pop_ranges[src_pop_idx].start;
^
[ 52%] Building CXX object CMakeFiles/neuroh5.graph.dir/src/graph/write_projection.cc.o
[ 52%] Built target neuroh5.graph
[ 53%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/attr_kind_datatype.cc.o
[ 55%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/copy_h5types.cc.o
[ 56%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/create_file_toplevel.cc.o
[ 57%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/create_group.cc.o
[ 58%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/dataset_num_elements.cc.o
[ 59%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/dataset_type.cc.o
[ 60%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/exists_dataset.cc.o
[ 61%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/exists_group.cc.o
[ 62%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/exists_h5types.cc.o
[ 64%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/file_access.cc.o
/path/to/neuroh5/src/hdf5/file_access.cc: In function ‘int neuroh5::hdf5::what_is_open(hid_t, int)’:
/path/to/neuroh5/src/hdf5/file_access.cc:86:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
herr_t status;
^
[ 65%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/group_contents.cc.o
[ 66%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/num_projection_blocks.cc.o
/path/to/neuroh5/src/hdf5/num_projection_blocks.cc: In function ‘hsize_t neuroh5::hdf5::num_projection_blocks(MPI_Comm, const string&, const string&, const string&)’:
/path/to/neuroh5/src/hdf5/num_projection_blocks.cc:23:14: warning: unused variable ‘ierr’ [-Wunused-variable]
herr_t ierr = 0;
^
[ 67%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/path_names.cc.o
[ 68%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/read_cell_index_ptr.cc.o
[ 69%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/read_link_names.cc.o
[ 70%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/read_projection_dataset_selection.cc.o
/path/to/neuroh5/src/hdf5/read_projection_dataset_selection.cc: In function ‘herr_t neuroh5::hdf5::read_projection_dataset_selection(MPI_Comm, const string&, const string&, const string&, const NODE_IDX_T&, const NODE_IDX_T&, const std::vector<unsigned int>&, neuroh5::DST_PTR_T&, std::vector<unsigned int>&, std::vector<long unsigned int>&, std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<unsigned int>&, size_t&, bool)’:
/path/to/neuroh5/src/hdf5/read_projection_dataset_selection.cc:279:27: warning: unused variable ‘src_idx_start’ [-Wunused-variable]
hsize_t src_idx_start=range.first;
^
In file included from /path/to/neuroh5/src/hdf5/read_projection_dataset_selection.cc:20:0:
/path/to/neuroh5/include/hdf5/read_template.hh: In instantiation of ‘herr_t neuroh5::hdf5::read_selection(hid_t, const string&, hid_t, const std::vector<std::pair<long long unsigned int, long long unsigned int> >&, std::vector<_RealType>&, hid_t) [with T = unsigned int; herr_t = int; hid_t = long int; std::string = std::basic_string<char>]’:
/path/to/neuroh5/src/hdf5/read_projection_dataset_selection.cc:331:16: required from here
/path/to/neuroh5/include/hdf5/read_template.hh:93:19: warning: unused variable ‘start’ [-Wunused-variable]
hsize_t start = range.first;
^
[ 71%] Building CXX object CMakeFiles/neuroh5.hdf5.dir/src/hdf5/read_projection_datasets.cc.o
[ 71%] Built target neuroh5.hdf5
[ 73%] Building CXX object CMakeFiles/neuroh5.io.dir/src/io/read_layer_swc.cc.o
[ 74%] Building CXX object CMakeFiles/neuroh5.io.dir/src/io/read_syn_projection.cc.o
[ 75%] Building CXX object CMakeFiles/neuroh5.io.dir/src/io/read_txt_projection.cc.o
[ 75%] Built target neuroh5.io
[ 76%] Building CXX object CMakeFiles/neuroh5.mpi.dir/src/mpi/mpe_seq.cc.o
[ 77%] Building CXX object CMakeFiles/neuroh5.mpi.dir/src/mpi/rank_range.cc.o
[ 77%] Built target neuroh5.mpi
[ 78%] Building CXX object CMakeFiles/neurograph_reader.dir/src/driver/neurograph_reader.cc.o
/path/to/neuroh5/src/driver/neurograph_reader.cc: In function ‘int main(int, char**)’:
/path/to/neuroh5/src/driver/neurograph_reader.cc:143:8: warning: variable ‘opt_attrs’ set but not used [-Wunused-but-set-variable]
bool opt_attrs = false;
^
[ 79%] Linking CXX executable bin/neurograph_reader
[ 79%] Built target neurograph_reader
[ 80%] Building CXX object CMakeFiles/neurograph_scatter_read.dir/src/driver/neurograph_scatter_read.cc.o
/path/to/neuroh5/src/driver/neurograph_scatter_read.cc: In function ‘int main(int, char**)’:
/path/to/neuroh5/src/driver/neurograph_scatter_read.cc:98:5: warning: variable ‘opt_attrs’ set but not used [-Wunused-but-set-variable]
opt_attrs = false,
^
/path/to/neuroh5/src/driver/neurograph_scatter_read.cc:100:5: warning: variable ‘opt_edgemap’ set but not used [-Wunused-but-set-variable]
opt_edgemap = false;
^
[ 82%] Linking CXX executable bin/neurograph_scatter_read
[ 82%] Built target neurograph_scatter_read
[ 83%] Building CXX object CMakeFiles/balance_indegree.dir/src/driver/balance_indegree.cc.o
[ 84%] Linking CXX executable bin/balance_indegree
[ 84%] Built target balance_indegree
[ 85%] Building CXX object CMakeFiles/neurograph_vertex_metrics.dir/src/driver/vertex_metrics.cc.o
/path/to/neuroh5/src/driver/vertex_metrics.cc: In function ‘int main(int, char**)’:
/path/to/neuroh5/src/driver/vertex_metrics.cc:114:5: warning: variable ‘opt_output’ set but not used [-Wunused-but-set-variable]
opt_output = false;
^
[ 86%] Linking CXX executable bin/neurograph_vertex_metrics
[ 86%] Built target neurograph_vertex_metrics
[ 87%] Building CXX object CMakeFiles/neurograph_import.dir/src/driver/neurograph_import.cc.o
/path/to/neuroh5/src/driver/neurograph_import.cc: In function ‘int main(int, char**)’:
/path/to/neuroh5/src/driver/neurograph_import.cc:549:23: warning: variable ‘dst_pop_idx’ set but not used [-Wunused-but-set-variable]
size_t src_pop_idx, dst_pop_idx; bool src_pop_set=false, dst_pop_set=false;
^
/path/to/neuroh5/src/driver/neurograph_import.cc:313:8: warning: variable ‘opt_attr_names’ set but not used [-Wunused-but-set-variable]
bool opt_attr_names = false;
^
/path/to/neuroh5/src/driver/neurograph_import.cc:314:8: warning: variable ‘opt_io_size’ set but not used [-Wunused-but-set-variable]
bool opt_io_size = false;
^
/path/to/neuroh5/src/driver/neurograph_import.cc:317:8: warning: variable ‘opt_dst_offset’ set but not used [-Wunused-but-set-variable]
bool opt_dst_offset = false,
^
/path/to/neuroh5/src/driver/neurograph_import.cc:318:5: warning: variable ‘opt_src_offset’ set but not used [-Wunused-but-set-variable]
opt_src_offset = false;
^
/path/to/neuroh5/src/driver/neurograph_import.cc:590:40: warning: ‘src_pop_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
src_range[0] = pop_ranges[src_pop_idx].start;
^
[ 88%] Linking CXX executable bin/neurograph_import
[ 88%] Built target neurograph_import
[ 89%] Building CXX object CMakeFiles/neurotrees_copy.dir/src/driver/neurotrees_copy.cc.o
In file included from /path/to/neuroh5/include/data/attr_val.hh:16:0,
from /path/to/neuroh5/include/neuroh5_types.hh:34,
from /path/to/neuroh5/src/driver/neurotrees_copy.cc:29:
/path/to/neuroh5/src/driver/neurotrees_copy.cc: In function ‘int main(int, char**)’:
/path/to/neuroh5/src/driver/neurotrees_copy.cc:347:43: error: expected primary-expression before ‘void’
throw_assert(cell::append_trees<void>(all_comm, output_filename, pop_name, pop_start, output_tree_list) == 0,
^
/path/to/neuroh5/include/throw_assert.hh:145:48: note: in definition of macro ‘throw_assert’
#define throw_assert(EXPRESSION, MESSAGE) if(!(EXPRESSION)) { throw AssertionFailureException(#EXPRESSION, __FILE__, __LINE__, (AssertionFailureException::StreamFormatter() << MESSAGE)); }
^
/path/to/neuroh5/src/driver/neurotrees_copy.cc:347:43: error: expected ‘)’ before ‘void’
throw_assert(cell::append_trees<void>(all_comm, output_filename, pop_name, pop_start, output_tree_list) == 0,
^
/path/to/neuroh5/include/throw_assert.hh:145:48: note: in definition of macro ‘throw_assert’
#define throw_assert(EXPRESSION, MESSAGE) if(!(EXPRESSION)) { throw AssertionFailureException(#EXPRESSION, __FILE__, __LINE__, (AssertionFailureException::StreamFormatter() << MESSAGE)); }
^
/path/to/neuroh5/src/driver/neurotrees_copy.cc:348:48: error: expected ‘)’ before ‘;’ token
"error in append_trees");
^
In file included from /path/to/neuroh5/include/data/attr_val.hh:16:0,
from /path/to/neuroh5/include/neuroh5_types.hh:34,
from /path/to/neuroh5/src/driver/neurotrees_copy.cc:29:
/path/to/neuroh5/src/driver/neurotrees_copy.cc:356:39: error: expected primary-expression before ‘void’
throw_assert(cell::append_trees<void>(all_comm, output_filename, pop_name, pop_start, output_tree_list) == 0,
^
/path/to/neuroh5/include/throw_assert.hh:145:48: note: in definition of macro ‘throw_assert’
#define throw_assert(EXPRESSION, MESSAGE) if(!(EXPRESSION)) { throw AssertionFailureException(#EXPRESSION, __FILE__, __LINE__, (AssertionFailureException::StreamFormatter() << MESSAGE)); }
^
/path/to/neuroh5/src/driver/neurotrees_copy.cc:356:39: error: expected ‘)’ before ‘void’
throw_assert(cell::append_trees<void>(all_comm, output_filename, pop_name, pop_start, output_tree_list) == 0,
^
/path/to/neuroh5/include/throw_assert.hh:145:48: note: in definition of macro ‘throw_assert’
#define throw_assert(EXPRESSION, MESSAGE) if(!(EXPRESSION)) { throw AssertionFailureException(#EXPRESSION, __FILE__, __LINE__, (AssertionFailureException::StreamFormatter() << MESSAGE)); }
^
/path/to/neuroh5/src/driver/neurotrees_copy.cc:357:44: error: expected ‘)’ before ‘;’ token
"error in append_trees");
^
make[2]: *** [CMakeFiles/neurotrees_copy.dir/src/driver/neurotrees_copy.cc.o] Error 1
make[1]: *** [CMakeFiles/neurotrees_copy.dir/all] Error 2
make: *** [all] Error 2
```