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avsdf-base

A JS implementation of Adjacent Vertex with Smallest Degree First algorithm

cd2sbgnml-webservice

An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml

chilat

Automatically exported from code.google.com/p/chied.improved-animation

chilay

Chisio Layout (ChiLay) provides a graph layout framework along with a number of layout algorithms implemented in Java. Layout services can be used locally or remotely (through HTTP) from a server.

chilay.maven-repo

Automatically exported from code.google.com/p/chilay.maven-repo

chise.js

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

cmgm

CMGM is a unified complexity management framework for compound graphs

cose-base

Core module for compound spring embedder based layout styles

cose-lat

A tool for animation during CoSE layout to debug and improve the algorithm

cosep-base

Core module for compound spring embedder based layout styles with port support

cytoscape-sbgn-stylesheet

View biological networks via Cytoscape.js and sbgn-ml

cytoscape.js

Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)

cytoscape.js-autopan-on-drag

A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds

cytoscape.js-avsdf

An implementation of the circular layout algorithm by He & Sykora

cytoscape.js-c-tsm

Compound-Topology Shape Metrics Approach

cytoscape.js-chola

Orthogonal layout for graphs with compound nodes

cytoscape.js-cise

An implementation of the circular layout algorithm by Dogrusoz et al. as a Cytoscape.js extension

cytoscape.js-clipboard

A Cytoscape.js extension to provide copy-paste utilities

cytoscape.js-complexity-management

A Cytoscape.js extension to provide a unified complexity management framework for compound graphs

cytoscape.js-context-menus

A Cytoscape.js extension to provide context menu around elements and core instance

cytoscape.js-cose-bilkent

The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.

cytoscape.js-cosep

Compound Spring Embedder with Ports (CoSEP)

cytoscape.js-edge-editing

A Cytoscape.js extension enabling interactive editing of edge anchor (bend or control) points

cytoscape.js-expand-collapse

A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs

cytoscape.js-fcose

fCoSE: a fast Compound Spring Embedder

cytoscape.js-graph-algos

cytoscape.js-graphml

A Cytoscape.js extension to import from and export to GraphML format

cytoscape.js-grid-guide

A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.

cytoscape.js-hyse

Hybrid Spring Embedder

cytoscape.js-layout-service

Web-service on cytoscape.js to layout graphs