Cannot load this model about chise.js HOT 9 CLOSED

From @metincansiper on October 15, 2015 12:30

The reason why it cannot be loaded is that the class of some nodes in this file is "annotation" which is not handled in sbgnviz.

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From @ugurdogrusoz on October 15, 2015 15:9

Can we change our reader to "skip" such unrecognized classes?

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From @metincansiper on October 20, 2015 12:7

Is skipping these classes means that when an element has one of these classes drawing it as a normal element(an element with no specific sbgnclass)?

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From @ugurdogrusoz on October 20, 2015 13:32

Can't we just "ignore" them? "annotation" must be inside a glyph or arch, a property of a node or an edge that SBGNViz would not understand or care about. We should just skip such unrecognized elements.

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From @cannin on October 20, 2015 15:6

Can you draw them as shown below? I think there are several glyphs that I do not think you are supporting. Ideally, you'd have them all, but in the meantime, can you put a simple placeholder, so that people at least know something was there and what it was supposed to be?

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From @ugurdogrusoz on October 20, 2015 15:8

I am confused Augustin. Are these "annotation"s actually units of information?

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From @cannin on October 21, 2015 19:42

The proposed solution is a hack. While I think SBGNViz should support all the SBGN glyphs, I understand there can be resource limitations in implementing everything. I would rather see a default visualization of an unknown glyph instead of it disappearing from the diagram completely. The suggested rectangle would hopefully be a very simple way of doing the default representation of an unknown glyph.

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From @metincansiper on October 23, 2015 6:24

Just ignored the unrecognized classes at least for now.

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glyph annotations will be supported in persistence in chise at some point; a separate issue

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