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A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

License: GNU General Public License v3.0

Python 39.58% Jupyter Notebook 60.42%
covid sars-cov-2 sars covid-19 covid19 covid19-data fasta proteinblast proteins orf

viral-protein-analyzer's Introduction

ViralProteinAnalyzer

Thank you to @syclops for the helper functions used.

Folder RelevantBLASTQueries contains protein-BLAST search queries mentioned in proteinpaper.ipynb

helpers.py contains helper functions used by gene_finder.py

gene_finder.py contains functions used to analyze viral genome for protein encoding ORFs

proteinpaper.ipynb contains computational research paper on this project (START HERE)

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