japrin Goto Github PK

adtex

To make it can run on my server, I made some modification based on ADTEx.v.1.0.4 (http://adtex.sourceforge.net/)

awesome

:sunglasses: Curated list of awesome lists

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bv

Data Viewer in Terminal for Bioinformatician

cancer

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

echarts4r

🐳 ECharts 4 for R

fakegenome

A simulation program

garnett

Automated cell type classification

harmony

Scalable integration of single cell RNAseq data for batch correction and meta analysis

infercnv

Inferring CNV from Single-Cell RNA-Seq

isee

R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class

japrin.github.io

kobackupdec

Huawei backup decryptor

mclust

based on mclust 5.4.5 (https://cran.r-project.org/web/packages/mclust/index.html)

mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

monocle-release

my.config

nozzle

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

panc.t

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

r-appveyor

Tools for using R with AppVeyor (https://appveyor.com)

sc3

SC3 forked from SC3.1.7.2 (https://bioconductor.org/packages/release/bioc/html/SC3.html)

scdva

An R shiny based tool used for single cell RNA-seq data visualization and analysis.

scexplorershiny

scRNA-seq data explorer based on Shiny

scope

Fast visualization tool for large-scale and high dimensional single-cell data

scpanoview