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japrin's Projects

scpip icon scpip

A pipeline for scRNA-seq data analysis

screclassify icon screclassify

Post hoc cell type classification of single-cell RNA-sequencing data.

scvi icon scvi

Deep generative modeling for single-cell transcriptomics

sk icon sk

some usefull script

sscclust icon sscclust

simpler single cell RNAseq data clustering

sscvis icon sscvis

simpler single cell RNAseq data Visualization

ssgsea2.0 icon ssgsea2.0

Single sample Gene Set Enrichment analysis (ssGSEA)

startrac icon startrac

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

titancna icon titancna

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

tracer icon tracer

I made some modifications based on TraCeR v0.1.2 (https://github.com/Teichlab/tracer) to meet the requirement of my projects

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