When q units are changed from A-1 to nm-1 in the Radial Averaging panel, the old units of (A) still appear in the column labels of both the BIFT and GNOM windows. In other places, I think unit labels have simply been removed elsewhere, so that's a quick fix to avoid confusion. Longer term, probably plots should have unit labels.

When building a docker image and and installing BioXTAS from pre-downloaded 2.2.2.zip file I have this problem:

Python 3.10.13 | packaged by conda-forge | (main, Oct 26 2023, 17:57:40) [GCC 12.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import bioxtasraw.RAWAPI as raw
WARNING:silx.opencl.common:The module pyOpenCL has been imported but can't be used here
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/miniforge3/lib/python3.10/site-packages/bioxtasraw/RAWAPI.py", line 63, in <module>
    import bioxtasraw.DENSS as DENSS
  File "/miniforge3/lib/python3.10/site-packages/bioxtasraw/DENSS.py", line 62, in <module>
    import bioxtasraw.denss_resources.resources as resources
ModuleNotFoundError: No module named 'bioxtasraw.denss_resources'
>>> 

When building a docker image and installing BioXTAS from main things are working...

Python 3.10.13 | packaged by conda-forge | (main, Oct 26 2023, 17:57:40) [GCC 12.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import bioxtasraw.RAWAPI as raw
WARNING:silx.opencl.common:The module pyOpenCL has been imported but can't be used here

However, because of the large size of the repo I sometimes run into problems cloning during a docker build. Would you mind cutting a new release from main?

thanks

Here's the traceback:

Traceback (most recent call last):

  File ~\AppData\Local\Programs\Python\Python311\Lib\site-packages\spyder_kernels\py3compat.py:356 in compat_exec
    exec(code, globals, locals)

  File c:\users\anton\desktop\dio\h5read.py:104
    avg_buff, success, error = series.averageFrames(buff_range, 'sub', 'CorMap', 0.01, 'Bonferroni', forced = True)

  File ~\AppData\Local\Programs\Python\Python311\Lib\site-packages\bioxtasraw\SECM.py:1528 in averageFrames
    avg_list = sasm_list

UnboundLocalError: cannot access local variable 'sasm_list' where it is not associated with a value

Basically sasm_list is only defined in the case of an unsubtracted series at line 1485:

if series_type == 'unsub':
        sasm_list = [self._sasm_list[idx] for idx in frame_idx]

I quickly fixed it by adding this to handle my case:

elif series_type == 'sub':
        sasm_list = [self.subtracted_sasm_list[idx] for idx in frame_idx]

Although maybe you want to fix it properly to handle all possible cases.
Also, the parameters' default values for this method aren't set as they are described in the documentation, but that's also an easy fix.

This may or may not be a bioxtasraw issue, but I'm at a bit of a lose on how to fix this.... or even what the problem is.

This is the error:

>>> import bioxtasraw.RAWAPI as raw
dlopen("/home/app/.cache/pocl/kcache/BE/BJKPFDOLMJHLOMHFOOHOPFAFADFHBADNAHCNP/check_atomic32/0-0-0/check_atomic32.so") failed with '/home/app/.cache/pocl/kcache/BE/BJKPFDOLMJHLOMHFOOHOPFAFADFHBADNAHCNP/check_atomic32/0-0-0/check_atomic32.so: undefined symbol: __aarch64_ldadd4_acq_rel'.
note: missing symbols in the kernel binary might be reported as 'file not found' errors.
Aborted

Background:

I am attempting to build a Docker image that includes Miniconda3 and the BioXTAS command line tools (no GUI needed). I am developing on an M3 Apple machine within Docker Desktop. The Docker builder supports these architectures:

arm64
amd64
amd64/v2
riscv64
ppc64le
s390x
386
mips64le
mips64
arm/v7
arm/v6

This is the list of packages that I install before building BioXTAS:

dependencies:
  - pocl
  - pillow
  - six
  - wheel
  - numpy
  - scipy
  - matplotlib
  - python-igraph
  - numba
  - h5py
  - cython
  - numexpr
  - reportlab
  - dbus-python
  - fabio
  - pyfai
  - hdf5plugin
  - mmcif_pdbx
  - svglib
  - libmamba

and this is a snippet from the Dockerfile if you're interested:

RUN apt-get update && \
    apt-get install -y zip build-essential libarchive13

# Copy the source ZIP file
COPY bioxtas/bioxtasraw-2.2.2.zip /tmp/bioxtasraw-2.2.2.zip

# Install BioXYAS from source
WORKDIR /tmp
RUN unzip bioxtasraw-2.2.2.zip && \
    cd bioxtasraw-2.2.2 && \
    python3 setup.py build_ext --inplace && \
    pip3 install . && \
    cd .. && \
    rm bioxtasraw-2.2.2.zip && \
    rm -rf bioxtasraw-2.2.2